barSeed - Barley Seed Development Database

Probe CUST_3035_PI390587928

Source Contig U35_6264

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3035_PI390587928	Hv_44K_v2	GCCCGAATCCAAGCTCTAAAAAGATACAACCTCCGTTCACAAATATAAGATGTTCTACTC	1567	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.075	2.048	1.133	0.808	0.337	0.396
Raw	269.235	407.937	203.874	233.663	32.366	42.544

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_11353.1	618	8e-25	405 - 464	100	60 / 60	plus
Harvest35	U35_6264	1644	3e-25	1568 - 1627	100	60 / 60	plus

Contig Sequence (1644 bp)

>U35_6264 1644 Hv_44K_v2
TTCACCGGAGATTGCACCACCCGGGTTTGAGAGTTTTAGATTGTCATGGCAACCATTGTC
CATGCCTCCGTCTGGGACTGCATATATCATGTCAGATGCTGCTGTGATGCCATTGGCCGT
GACATTGGAGGAAGCAGCTGGATCACCACATGCATTGGAGGCAATGGATGTGGACATGCA
TACCATACATCCACTAATGGCACCTTTAGAGAGTGGAGTGGAAGGATCACTGCAAGAGCC
GAAACCAAGACCACCTTCTCCTATTTTGCAAGATGTGCCCAATTCGCCAGATATGGCACC
TCCAGGGTTTGAGAATTTCAAGTCATCACAGCTACTGCTACCATCTCCAGTCTTCTCACA
GACTGCATACATCTTACACGATTCAGCCACCACTATAGCTGAATATGTGTCAGAGGAAGC
AACTCAGCTATCGCCTACATTAGAAGCAATTGATGTGAAAACGGAGACATCACCGAAGAC
TGGAGCGGAGGGGTCATTACCACAACAACTGCACCGGCGGCCATCTCCTAAGGAGAATAG
TACTGCTTGTTCACCAGAGATAGTGCCTTCAGGGCATGAGAACCTGCAGCCTTTGCCATA
TCCTGCTTTTCTTCCTCAAGCTCAGACCCCAGATGTGGTTGCCACTGGGGCAGTCATAGG
GGCATTGGACCAAGTGCATCATCCAGCGCCTGTACTGGGGACAATTGAAGAGGGCACAAC
ACCCATTCTGTCATCACCGTCGAAGAGCGGGTTATTGCCACAGCTAGAGCCACAGATGAA
TTCTGTTACGACGCATGCTGTGGACACCCCGGCACATGTACCTGCCACAGATTGTGTTAC
TGTTAACTCAGAGGGAACAGTTCTGCTACCGCCAGCATCGCAGGCGATGGATGCAAACAT
GGACAGTGCAACTACAGTACTCCCGCGATTGGAGAATGGAGCAGAGGGGTCATTGCCCCA
GCTAAGGCAGCAGTCATCTTCTCCAAATGTTCAGGCCGCTCCTTGTTCATTGGACGCGGT
GGAACTTCTGCCACCACCACCACCCCCTTTCGTAAACAAAGAAATAGGTCAAATGGTGTG
TGGAAGCTGCTATGAACTTATTGCTTATCCTAGAGGTGCCGTTCATGTACAGTGTTCTGC
CTGTCGGACAATAAACCTAGTATTGGAAGCACATGAAGTTGGGAATGTACACTGTGGACA
ATGTGAGACATTGCTGATGTATCCTTTTGGGGCTCCTGCGGTTAAATGTTCTTTGTGTCT
TTTTGTCACTGAAATTGGAGAGCGGAATGTTCGTCCGCGGATATCAGTCGAGCAGGTTAC
ACCAACTCACCAACAAGAGTTGGCTAACCAGGTCTAGGTGAAGCTAATCAATATTGGTCC
TGTATACCTGGTTTACTGTAATCCAAAGAAACTTCAAACACCATCTATAAAAAAAAAGGA
AAACTTGAAATGCTGGTGTGGAAATTCTTGCAGTTTTTGGCATGGGCACTTTGCTCTCCG
GAGATGTAGAAAGTTCAAATCCAGCCTGTAGCGTGGGGATAAAAAGAGGGTACAAAAATA
CTAGTGTGCCCGAATCCAAGCTCTAAAAAGATACAACCTCCGTTCACAAATATAAGATGT
TCTACTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6264 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42710.1	1464	2e-115	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	None
Arabidopsis v10	None