barSeed - Barley Seed Development Database

Probe CUST_30342_PI390587928

Source Contig U35_19699

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30342_PI390587928	Hv_44K_v2	ATAGTCAGCCATGGATAAGGCATCCATTGCCGTCCTCTCCTTGGCCTTCCTCTTCCTGCT	85	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369081	1750	2e-24	53 - 112	100	60 / 60	plus	ABC14663
MLOC	MLOC_74232.1	2049	2e-24	265 - 324	100	60 / 60	plus	ABC14663
JLOC1	JLOC1_49463.1	1925	8e-25	118 - 177	100	60 / 60	plus
Harvest21	ABC20436	814	3e-25	32 - 91	100	60 / 60	plus
Harvest35	U35_19699	870	3e-25	86 - 145	100	60 / 60	plus

Contig Sequence (870 bp)

>U35_19699 870 Hv_44K_v2
CGGAATTCCTTTTTTTTGGGGGCCTACTAAACCCAATCAGTCTGCGAGTTCGAGACACAT
CAGTACATCCATCACTTCCCCACGGATAGTCAGCCATGGATAAGGCATCCATTGCCGTCC
TCTCCTTGGCCTTCCTCTTCCTGCTCCACTACATTCTGGGCAAGAGGAGCGATGGCAGGC
GCGGCAAGGGCAAGGGCGCCGTGCAGCTGCCGCCGAGCCCCCCGGCCGTCCCGTTCTTCG
GCCACCTCCACCTCGTGGAGAAGCCGTTGCACGCCGCACTGTGCCGCCTCGGGGCGCGCC
ATGGGCCGGTCTTCTCGCTTCGGCTCGGCGCGCGCAACGCCGTGGTGGTGTCCTCGCCGG
CGTGCGCCAGGGAGTGCTTCACGGACCACGACGTGGCCTTCGCCAACCGGCCCCAGTTCC
CCTCGCAGATGCTCGTGTCCTACGGCGGCACCTCGCTCGTCAGCTCCAGCTACGGCCCGC
ACTGGCGCAACCTCCGCCGCGTCGCCGCCGTGCGCCTGCTCTCCGCGCATCGCGTCGCCG
GCATGTCGGGCGTCATCGCCGCCGAGGTGCGCGCCATGGCGCGCCGTCTGTACCGCGCCG
CCGCGGCGTCCCCCGGCGGCGCCGCGCGCGTGGAGCTCAAGCGGAGCCTGTTCGAGCTCT
CCCTGAGCGTGCTCATGGAGACTATCGCGCGGACCAAGGGCACCCGCTCGGAGGCGGACG
CTGACACGGACATGTCGGTGGAGGCGCACGAGTTCAAGCAGGTGGTGGACGAGATCATCC
CGCTCATCGGCGCGGCCAACCTGTGGGACTACCTGCCGGTGATGCGGAGGTTCGACGTGT
CCGGCGTGAGGAGCAGGATCCTGGCCACGG

Homology of Contig U35_19699 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55250.1	347	2e-91	protein\|cytochrome P450 81E1, putative, expressed
Brachypodium v1_2	Bradi1g14900.1	516	3e-100
Arabidopsis v10	None