barSeed - Barley Seed Development Database

Probe CUST_3033_PI390587928

Source Contig U35_6266

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3033_PI390587928	Hv_44K_v2	GTAGCCTGCTGAATTACCAAGTTCGGCGCCTTCTGAATGTCTCTGTTACAATACAAAAAA	483	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.391	0.460	0.837	1.446	2.179	1.254
Raw	54.740	97.652	145.086	371.358	200.711	130.297

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67435.2	1172	7e-23	59 - 115	100	57 / 57	minus	ABC13286
Harvest21	ABC13286	554	3e-25	484 - 543	100	60 / 60	plus	ABC13286
Harvest35	U35_6266	554	3e-25	484 - 543	100	60 / 60	plus

Contig Sequence (554 bp)

>U35_6266 554 Hv_44K_v2
GATCGCCCTTAGCTGCCTACTCACACTGAAGATCTCTCCGGCCGATCCTCCCATTCGCCT
TGTCACTCTCTCGTAGCTCGGCTCGATTTTTGTGTTCCCTGCACGCCGCGACCGGCCCAT
GTCGAGCCTGATAGATATTTGGACGGTGGAGGTGGACAGGATCCGGGCCACGAGGAGAAC
GCGGGAGCCGTTCAGACCGGCAGCTTCGTCCGGCGCACAAGAAGGCGGCCACGCAGCCCA
CCCGTCCGGCGACGGACATGGAACGCCAGCACCACGTGATGGCGCCATGGCTTGGCCGGC
CAAGGACCGGGCTGCCGGCGCTGGCTCGCCGTCGTCGCCGGTGCTCGTCCGAGAGGACGC
GTTCCTGTCCATCCTGGTTGATTGTTTCGGTCAGTAGATTGCACCGAACGATTAAACATG
TAGTAGTGACGTTCATAAGCTCCAGCTAGATGCAATGCAACCAAAGTGTCTTTCGTGATT
GCTGTAGCCTGCTGAATTACCAAGTTCGGCGCCTTCTGAATGTCTCTGTTACAATACAAA
AAAAAAAAAAAAAA

Homology of Contig U35_6266 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None