- Probe CUST_30336_PI390587928
- Source Contig U35_45968
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30336_PI390587928 | Hv_44K_v2 | CATGAACCTTAGTCAGGACTAGATTGTTAGATTTATGAACTGAATTGGTCATGACGAAAA | 42 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.983 | 1.960 | 1.251 | 0.614 | 0.206 | 0.175 |
| Raw | 949.820 | 1469.576 | 824.933 | 629.264 | 75.700 | 69.225 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_51624.1 | 876 | 2e-24 | 115 - 174 | 100 | 60 / 60 | plus | ABC03151 ABC03155 ABC45422 |
| Harvest21 | ABC45422 | 264 | 3e-25 | 43 - 102 | 100 | 60 / 60 | minus | ABC45422 |
| Harvest35 | U35_45968 | 264 | 3e-25 | 43 - 102 | 100 | 60 / 60 | minus |
Contig Sequence (264 bp)
>U35_45968 264 Hv_44K_v2 TTTTTTTTTTTTTTTTGCAGTTAAAATTTTCTTGCTAAAAAATTTTCGTCATGACCAATT CAGTTCATAAATCTAACAATCTAGTCCTGACTAAGGTTCATGACTAGTTTTTGCCATGGA TGTTCAGGTCCATGCATCTTACAACAACAAGCATGGCTGATTTACACTCCAACAAGGAAG AGCGGGAAGCTACCTACCGCGAGGAGGAGGAGGAGGAGCGGGCCCCCTTTTTTTTTGTGT AATCCCAGATGGCGATGGCGGCGC
Homology of Contig U35_45968 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |