barSeed - Barley Seed Development Database

Probe CUST_3032_PI390587928

Source Contig U35_6267

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3032_PI390587928	Hv_44K_v2	CTGAGGATATATGTTCAGATGGCATTTCACATGATATTCAAACACCTGATGTGCTTGATG	545	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374657	2199	2e-24	2058 - 2117	100	60 / 60	plus	ABC48041
MLOC	MLOC_63574.2	2753	3e-22	379 - 437	98	59 / 60	minus	ABC48041
MLOC	MLOC_63573.1	483	3e-22	287 - 345	98	59 / 60	minus	ABC48041
JLOC1	JLOC1_41656.1	4054	1e-22	2388 - 2446	98	59 / 60	plus
JLOC1	JLOC1_41655.2	4257	1e-22	1792 - 1850	98	59 / 60	minus
JLOC1	JLOC1_41655.1	4368	1e-22	1903 - 1961	98	59 / 60	minus
Harvest21	ABC48041	445	3e-25	369 - 428	100	60 / 60	plus	ABC48041
Harvest35	U35_6267	633	3e-25	546 - 605	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_6267 633 Hv_44K_v2
CGGGAAAGGGCAGAACACGATGCTGGTGCCGGCCAAGGGCGTGCGATACCTGCCCAGGAC
GTGGTGCGTGTACAACCCCAACGCCGAGGACAAGAGCAAGCTGGTGGAGAACGTGAACTA
CGCCTGCACCTTCGCCGACTGCACCGCGCTCGGCCTCGGCTCCACCTGCTACGGCATGGA
CGTCAATGGCAACGCCTCCTACGCCTTCAACATGTACTTCCAGGTGCAGAACCAGAAGGA
CGAGGCCTGCGACTTCCAGGCGCTCGCCGTGCCCACGCAGACCGACCCCTCCACCGCCGC
CTGCAACTTCCCCATACAGATCGCCGCCTCCTCGACGTCGGGTGGCCGCCGGCGGACGCG
CGCCGGGCCGCTCGGCGCCGTCGCTCTGTTCGTGCTGGCTCTGGCCCAGCTCTTGATCTC
GCATTAGGGAATGCAACAGAGTTATTTTACATCAGTTGATCATTTGTTGCCTCATATATT
TTTTGGATCTGCAGTAGTTACTAGCAGTATTTCAGTACGAGTCTTTGTACTGGAAGCATA
TATACCTGAGGATATATGTTCAGATGGCATTTCACATGATATTCAAACACCTGATGTGCT
TGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_6267 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57880.2	492	1e-57	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g06050.1	494	3e-58
Arabidopsis v10	None