barSeed - Barley Seed Development Database

Probe CUST_30324_PI390587928

Source Contig U35_11036

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30324_PI390587928	Hv_44K_v2	AGCCCTACCTCTAGCCATGTTATCATTGCTATCCTCGAGGATGCTACAATCAGATCATGT	376	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371801	5310	2e-24	368 - 427	100	60 / 60	plus	ABC05985 ABC31802
MLOC	MLOC_43633.2	5269	2e-24	149 - 208	100	60 / 60	plus	ABC05985 ABC31802
MLOC	MLOC_43633.1	5108	2e-24	156 - 215	100	60 / 60	plus	ABC05985 ABC31802
JLOC1	JLOC1_28210.1	5179	8e-25	155 - 214	100	60 / 60	plus
Harvest35	U35_11036	437	3e-25	377 - 436	100	60 / 60	plus

Contig Sequence (437 bp)

>U35_11036 437 Hv_44K_v2
AGTATAGCCTAGCCGAGTCGCATCTTCTCGTGTCGTCCCCAGGAGAGGAGAGGAGAGCAG
AGCGAGATCAAATCCCACCACCGACCGACCGACCGGCCGCCGGGAGATCTGAGCCGGTGC
TGGCAGATCCGCTCCGCTCGGCTCGGCTCGGCGGCGCGATGGAGTGGGAGACGGTGCAGC
ACCTGGACCTCCGCCACGCCGGCGGCCGCCGCGGGGCCGGCGCCCCCGCGCGCCCGCTGC
AGCCGCACGCCGCCGCCTTCCGCGCCTCCCAAGCCATTGTCGCCGTCGCCGTCGGCACCC
ACGTCAATTTGATGCTTTGACTGGAAGCAAGATAGCTTTGGTTGACCTTGGAGCTCGTGT
TGTTCGTATGGCATATAGCCCTACCTCTAGCCATGTTATCATTGCTATCCTCGAGGATGC
TACAATCAGATCATGTG

Homology of Contig U35_11036 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None