barSeed - Barley Seed Development Database

Probe CUST_30321_PI390587928

Source Contig U35_11039

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30321_PI390587928	Hv_44K_v2	TTGATAATGAGCTGCAGAGGGCTGCCGAAAGTGTTCCAATTTTCATTACTGGTGATCACA	901	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52950.2	3183	2e-24	2234 - 2293	100	60 / 60	plus	None
MLOC	MLOC_52950.1	3251	2e-24	958 - 1017	100	60 / 60	minus	None
JLOC1	JLOC1_33974.1	3280	8e-25	2257 - 2316	100	60 / 60	plus
Harvest21	ABC22625	961	3e-25	902 - 961	100	60 / 60	plus
Harvest35	U35_11039	961	3e-25	902 - 961	100	60 / 60	plus

Contig Sequence (961 bp)

>U35_11039 961 Hv_44K_v2
CGAGGGACTTATCTCTTCCTCAAATCCCAAACCCTAGCCGCCACTCTAATTCTTACATCT
CCTTCCAGCCTACAACTTCTAGTGATGGTTCCCTTCTCCTTCAACTTTTTGTGGCACAAC
CAATTGAAGCGGTGGCGCTTTCCGTCCCCCGCTCCCCTTGCGCAGAGTTCTGCTCGTGCC
CTTGTCTTACCTGTCGCTCTCTACCCAAGTGACGGAACCCTTCAAGTGGAACGCGTTGAA
CCTGAAGATGACCTGGCGGATCCTGATGGACCATGCAAGGCTCGGAATAAGGCGTGCAAT
CTTGGGAAAGAAGGGTTTATTGAATCATCACCAGCAGGGAATTGTGACATCTGCTGCGTA
CATCCTGATTTCTGTCGTACATGCTGTTGCATTCTCTGTGGCAAGTCTGTTAACGATTCC
TTTGGAGGTTATAGTTACATCAAGTGTGAGGCAGTTGTGGTAGAGAACTACATCTGTGGG
CATCTTGCCCACCTTGACTGTGCTCTGAGGATTTTCATGGCTGGAACTGTTGGAGGAAGC
ATCGGGTTGGATGTGCAATATTACTGCAGGCGGTGTGACAACAAAACCAACCTGATGATG
CATGTGGAGAAACTCCTGGAAACATGTCGCTCTGTTGGATCAAGGAGTGAGATTCAGCCA
ATCCTTAATATGGGCTTGTGCATCTTGCGTGGTTCAAGACAAGTGCAAGCGAAAAGCTTG
GAGGACTATATGGCATCAGTGATGGCAAAGGTGAATAATGGGGTTGATCTTGCTGAAATA
TGGAATATGGAGGATGGTGATGGCATGTCAATACTGAATGCAGAAGAAAGTTCCCCACCT
ATTGCTGGTGTCACATTGCTAGGGACTGAGCCACAGTACCCATATCTGACTGATCCAATG
GTTGATAATGAGCTGCAGAGGGCTGCCGAAAGTGTTCCAATTTTCATTACTGGTGATCAC
A

Homology of Contig U35_11039 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53590.2	736	5e-101	protein\|expressed protein
Brachypodium v1_2	Bradi1g08780.1	712	3e-122
Arabidopsis v10	AT1G05410.1	471	4e-58	Protein of unknown function (DUF1423) \| chr1:1585504-1587268 REVERSE LENGTH=471