- Probe CUST_3031_PI390587928
- Source Contig U35_6268
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3031_PI390587928 | Hv_44K_v2 | TGATGATGACACTTTGTACTTTTACCCTGTGTGTATCATTTGATGGCTTTACTACATGTT | 417 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.134 | 1.611 | 1.603 | 0.859 | 0.230 | 0.257 |
| Raw | 1984.472 | 4396.053 | 3797.120 | 3359.889 | 296.801 | 369.079 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369530 | 3858 | 3e-21 | 3773 - 3826 | 100 | 54 / 54 | plus | None |
| MLOC | MLOC_52557.1 | 3482 | 3e-21 | 3409 - 3462 | 100 | 54 / 54 | plus | None |
| JLOC1 | JLOC1_33693.1 | 3467 | 2e-21 | 3409 - 3462 | 100 | 54 / 54 | plus | |
| Harvest35 | U35_6268 | 505 | 3e-25 | 418 - 477 | 100 | 60 / 60 | plus |
Contig Sequence (505 bp)
>U35_6268 505 Hv_44K_v2 TGGAGATCGAGACGATGAAGCACTACCTGGCCGAGAGCCGGCTGCCGGAGTCGGCCCTGG AGGGATTCTACCGCCACGAGAGCGGCGAGGATGCTCATGCCCATGCTCCGTCCACCGCCG GCCACGACGACGATCAGTCCTGGCGAGCTGCGTTTAAGTCCGAATTCGAATGATTGCTCG AGCTTCAGTTACTCGTCGGCTCCTTTGCCACCACCGGCGACGACGGTGACCACTCCTGGC GAGCTGATGCGTTTGCCTCTAAAGTCTAAATTGCTTGAATGATTGCTTGAGTAAGTCAAC TGAGCCTGGTTGACAATTAGGAAACAAGCGTTGATTCTTCGGTATTTCTTGATTTTTATA CATGTCTATGATGATTCAGTGCCCTCTGTTGGGGCAAAGCTTTGCCTTTTTTATGTATGA TGATGACACTTTGTACTTTTACCCTGTGTGTATCATTTGATGGCTTTACTACATGTTAAA AAAAAAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_6268 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |