barSeed - Barley Seed Development Database

Probe CUST_30319_PI390587928

Source Contig U35_23011

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30319_PI390587928	Hv_44K_v2	GTGCCAACGTAGTGTTTGATAGGCAGGAAATCATCTAATGCATTGCAAGGGTTTCATGTC	986	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.918	1.816	2.943	1.949	0.571	0.610
Raw	364.879	1160.345	1590.547	1670.679	171.477	199.152

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13076.1	3821	2e-24	294 - 353	100	60 / 60	minus	ABC18085
JLOC1	JLOC1_8818.1	3800	8e-25	3383 - 3442	100	60 / 60	plus
Harvest21	ABC18085	1065	3e-25	987 - 1046	100	60 / 60	plus	ABC18085
Harvest35	U35_23011	1065	3e-25	987 - 1046	100	60 / 60	plus

Contig Sequence (1065 bp)

>U35_23011 1065 Hv_44K_v2
CTCATGCTCTTGTGAACAACGACTGCGAGCTCGGCCGTGGTGGTTTTGGCACTGTCTACA
AGACCACTCTCCGAGATGGCCAACCTGTTGCCATCAAGAAACTGACTGTGTCAAGCTTGG
TTAAATCTCAAGATGAATTTGAGAGGGAAGTGAAGATGCTGGGCAAGCTACGCCACCGTA
ACCTTGTTGCACTCAAGGGCTATTATTGGACACCATCACTTCAGCTTCTTATCTATGAGT
TTGTCTCTGGGGGTAACTTGCATAAACAGCTTCATGAATCGTCCAATGCAAATTACCTTT
CATGGAAAGAAAGATTTGACATAGTTCTTGGCATGGCAAGAAGCCTGGCTCACCTCCACT
GGCATGACATTATCCACTACAACCTGAAGTCAAGCAACATTATGCTTGATGATTCGGGCG
AGGCCAAGGTGGGGGACTATGGATTGGCGAAGCTACTGCCAATGTTGGATCGGTATGTTC
TAAGCAGCAAGGTACAGAGTGCACTTGGTTACATGGCACCAGAATTTACATGCAGGACTG
TGAAGATAACCGAGAAATGTGATGTGTATGGATTTGGAGTTCTTGTACTGGAGGTCATGA
CAGGGAGGACACCAGTGGAGTACATGGAAGATGATGTTATTGTGCTGTGTGATGTGGTGA
GGGCTGCTCTGGATGAAGGCAAAGTGGAAGAGTGCGTGGATGAGAAGCTCTGCGGAAAAT
TCCCACTGGAAGAGGCGGTTCCTATCATGAAACTTGGCTTAGTGTGTACATCTCAGGTTC
CCTCCAATAGGCCAGACATGAGTGAGGTGGTGAACATATTGGAGTTGATCAGATGCCCAC
AGGACTGCCCAGAAGCCGAATTAGGTTAAGCTCTGTCTGCTTTGGCCCCCTTCTCGTCGG
GCCTTGTTTCATTTTGGGTATCCTTCTTTGCTTGGTAACCATTTAATCTATCTAGTATGC
TTTAGGTAGTAGGAGCAGGGTGGCAAGTGCCAACGTAGTGTTTGATAGGCAGGAAATCAT
CTAATGCATTGCAAGGGTTTCATGTCNNAAAAAAAAAAAAAAAAA

Homology of Contig U35_23011 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21730.1	972	0.0	protein\|receptor-like protein kinase precursor, putative, expressed
Brachypodium v1_2	Bradi1g63200.1	971	0.0
Arabidopsis v10	AT3G56370.1	964	5e-149	Leucine-rich repeat protein kinase family protein \| chr3:20899403-20902390 REVERSE LENGTH=964