barSeed - Barley Seed Development Database

Probe CUST_30315_PI390587928

Source Contig U35_23015

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30315_PI390587928	Hv_44K_v2	AAGAAAAGGATAACATCGAGCAGGTTTTCCGTAGTGCTATTTTCTGTTTAAGTGAGGAAG	1277	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248677.1	3548	2e-24	1329 - 1388	100	60 / 60	plus	ABC11876 ABC15312
MLOC	MLOC_10989.7	2977	2e-24	1557 - 1616	100	60 / 60	minus	None
MLOC	MLOC_10989.1	3375	2e-24	1962 - 2021	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.2	3375	2e-24	1962 - 2021	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.3	3379	2e-24	1962 - 2021	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.4	3472	2e-24	2015 - 2074	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.5	3476	2e-24	2015 - 2074	100	60 / 60	minus	ABC11876
JLOC1	JLOC1_7238.2	3231	8e-25	1399 - 1458	100	60 / 60	plus
JLOC1	JLOC1_7238.1	3193	8e-25	1361 - 1420	100	60 / 60	plus
Harvest21	ABC16834	1337	3e-25	1278 - 1337	100	60 / 60	plus
Harvest35	U35_23015	1337	3e-25	1278 - 1337	100	60 / 60	plus

Contig Sequence (1337 bp)

>U35_23015 1337 Hv_44K_v2
TGAGAGGGTTGCCTGCCTCCGGCCGGAGCGCTGCCCGACCACGTTCCCCATCACCAGGCC
TCCTCCAGCTCCGCTCATCCAGCGCCGCCTCCCCGCCGGACTCTAGTCGCCGCGCTGCAC
TTTCTTCGCCGTCTAAGACAGACAGAGAGAGAGGTAGGCCGCGTCGAGAAAAATGGAAGA
GGTGGAAAATACCAGCAAGCGTAAAGCACCCGAGCTGGATTCGGAGGACAGTTCCGCTGC
CGCTGTTCTGGATGGACAGCAGTCGCTGCCTGGCTTGGCTGCCAAGCGTCAGAACCTCTC
CCGGACGTGCATCCATGAGGTTGCTGCCCCCAGTGGCTACGATCTGTCCAAGGACGAGGC
CGTACATGGGACCCTTTCAAACCCTGTCTTTAACGGGAAAATGGCCAAGACATACCCGTT
TCAGCTCGACCCCTTCCAGAGTGTCTCGATTGCCTGCTTGGAGCGGAACGAATCTGTCTT
GGTCTCAGCTCACACCTCTGCGGGGAAGACGGCCCTTGCTGAGTACGCCATTGCAATGTC
GTTCAGAGACAAGCAGAGGGTCATATATACCTCTCCACTAAAGGCTCTGAGCAATCAGAA
GTACCGTGAGCTTAGTCAGGAATTTTCTGATGTTGGATTGATGACTGGTGATGTCACGCT
TCAGCCAAATGCTACTTGCCTGGTCATGACAACAGAAATCCTGAGGGCGATGCTTTATAG
GGGCTCCGAGGTGATCAAGGAAGTTGGTTGGGTTATATTTGATGAGATCCACTACATGAA
GGATCGTGAGAGAGGCGTTGTGTGGGAAGAGAGTATAGTTTTCCTGCCCCCTGCCATCAA
GATGGTCTTTCTTTCTGCTACCATGTCAAATGCAACCGAGTTCGCTGAGTGGATATGCAA
TCTGCACAAGCAGCCTTGTCACGTGGTGTATACAGACTTCAGGCCAACACCACTACAGCA
CTATGTGTTCCCAATAGGTGGGTCTGGTCTCTACCTTGTAGTGGATGAAAATGGTCAGTT
CAGGGAGGATAACTTTCTAAAGCTGCAAGACACATTTGCAAAGCAACCTAGTCAACCAGA
TGGGAGGAAGGGTGGTGGGCCTAAAGCCAGTGGCCGAATCGCAAAAGGTGGAAATGCTTC
TGGAACATCTGACATATACAGAATTGTCAAGATGATTATGGACCGCAAGTTTCAACCAGT
CATAATTTTCAGCTTTAGTAGAAGAGAATGTGAGCATCATGCCATGTCGATGTCAAAACT
TGATTTCAACACTCAGGAAGAAAAGGATAACATCGAGCAGGTTTTCCGTAGTGCTATTTT
CTGTTTAAGTGAGGAAG

Homology of Contig U35_23015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g07500.2	971	protein\|DSHCT domain containing protein, expressed
Brachypodium v1_2	Bradi4g24170.1	1006
Arabidopsis v10	AT2G06990.1	995	\| Symbols: HEN2 \| RNA helicase, ATP-dependent, SK12/DOB1 protein \| chr2:2895135-2900909 FORWARD LENGTH=995