barSeed - Barley Seed Development Database

Probe CUST_30306_PI390587928

Source Contig U35_38985

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30306_PI390587928	Hv_44K_v2	CAAGGAGGCTACCAGGATCATTGCCAGCTCTCTGATGTTCATCAACTCGGGAACCAATGA	474	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3645.3	1357	2e-24	708 - 767	100	60 / 60	plus	ABC19446
MLOC	MLOC_3645.1	1723	2e-24	946 - 1005	100	60 / 60	plus	ABC19446
MLOC	MLOC_3645.2	2022	2e-24	946 - 1005	100	60 / 60	plus	ABC19446
JLOC1	JLOC1_2189.1	1409	8e-25	620 - 679	100	60 / 60	plus
Harvest21	ABC34991	534	3e-25	475 - 534	100	60 / 60	plus
Harvest35	U35_38985	534	3e-25	475 - 534	100	60 / 60	plus

Contig Sequence (534 bp)

>U35_38985 534 Hv_44K_v2
AAGAACCTCGCCAATGGCGCACCCTGTCCTTCTCCTTCTCCTGGCGCTCCTCCTCCTCCT
CACCACCCCCGCAATCTCTTCCTCCAAGAGAACTCAGCCAAGGTTCCCGGCCATCTTCTA
CTTCGGCGACTCCATCTTCGACACCGGCAACAACAACCACATCCCGACTCTGGGCCTGGC
GAACCACCCTCCATACGGGAGGGACTTCCCAGGAAGCAGGCCGACGGGGAGGTTCTCCAA
TGGCCGGCTCGTCCCGGACCTCCTCAACGAGAGGCTGCAGCTCAAGGAGTTCTCGCCGCC
GTTCCTGGACGCGGGGCTGTCCGACAAGGACATCATGACGGGGGTGAACTTCGCGTCGGC
CGGGTCGGGGTTCGACGACCGGACGTCGCGCGTGGCCAACACCATGCCATTGTCGGTGCA
GGTGGACCTCTTCAGGGACGAGTACCTTCCTCGGCTCAGGAGCATCTCCGGGGACAAGGA
GGCTACCAGGATCATTGCCAGCTCTCTGATGTTCATCAACTCGGGAACCAATGA

Homology of Contig U35_38985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g61200.1	351	1e-77	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g53830.1	347	2e-82
Arabidopsis v10	None