- Probe CUST_30303_PI390587928
- Source Contig U35_11040
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30303_PI390587928 | Hv_44K_v2 | TACTGCTGATTTGAATCTTGCGTGACAGTTTTTACTGCTAGTAACAGATTAATTAGGTTG | 257 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.166 | 0.277 | 0.858 | 1.894 | 1.181 | 1.355 |
| Raw | 85.493 | 235.340 | 625.435 | 2089.391 | 468.911 | 584.777 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57429.1 | 1821 | 2e-24 | 7 - 66 | 100 | 60 / 60 | minus | ABC22585 |
| JLOC1 | JLOC1_37222.1 | 381 | 8e-25 | 74 - 133 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC22585 | 317 | 3e-25 | 258 - 317 | 100 | 60 / 60 | plus | ABC22585 |
| Harvest35 | U35_11040 | 317 | 3e-25 | 258 - 317 | 100 | 60 / 60 | plus |
Contig Sequence (317 bp)
>U35_11040 317 Hv_44K_v2 TCCCCATCCACTCCGCTCCCCACCACCGCCGCGGCCTGCCCCGCGTGCCGCTGCCCCGTC ACCGGCACCGTGCAAGTCTTCTTCGCGTGAGACGGGTCAGCCGCCGCTGGATCATGAAAC TGGGGCCATGGAGAAAGCTGTAGAACAGATCAAGACAGGGTGCATAATTCCTTCCTCTCT TTGCCCTCCCGTGCTAGTGGGCTGATCCTTCCATCCATGATCGCTTCACCTCTTTTGCTA GTGATGCTGTAAATCATTACTGCTGATTTGAATCTTGCGTGACAGTTTTTACTGCTAGTA ACAGATTAATTAGGTTG
Homology of Contig U35_11040 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |