barSeed - Barley Seed Development Database

Probe CUST_30301_PI390587928

Source Contig U35_11042

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30301_PI390587928	Hv_44K_v2	TTCTGTCTATGCAAGCAAACAATTCAGCTGGCGCACAAGAATGCTAGTTGTAACTGATTG	531	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	30.468	17.275	2.225	0.196	0.130	0.125
Raw	1600.487	1441.591	157.679	23.561	3.048	4.178

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51239.1	2161	7e-23	1735 - 1794	98	59 / 60	plus	None
JLOC1	JLOC1_32719.1	2102	8e-25	1735 - 1794	100	60 / 60	plus
Harvest21	ABC25865	594	3e-25	532 - 591	100	60 / 60	plus
Harvest35	U35_11042	594	3e-25	532 - 591	100	60 / 60	plus

Contig Sequence (594 bp)

>U35_11042 594 Hv_44K_v2
TGTATATGCACTTGGTGACTGTGCAACTATAACTCAAAGAAAAGTGATGGAAGATGTTGA
TGCAATCTTCCGGGTAGCAGACAAGGATAATTCTGGCACTCTAACTGTAAAGAAAATAAA
AAATGTTCTTGGCGACATCTATCAAAGGTACCCACAGGTGGAGCTGTATCTTAAAACCAA
CCAAATGAAGGGCTTCAATGACCTGCTGAAAGATAAGGAGTCAGAAGAATTGAACATTGA
AGAATTCAAAAAAGCCCTTGCTCAGGTGGACTCGCAAGTCAAGATGCTCCCAGCAACTGC
ACAGGTTGCTGCACAAGAGGGAGCTTATCTGGCAGATTGCTTCAACAGGCTGAATACTTG
TGAAGAAAATCCTGAAGGCCCTCTAAGGATCAGGGGAGCAGGGCGTCATCGGTTCAAACC
TTTCAGGTACAGGCATCTCGGCCAATTTGCTCCGCTGGGTGGAGAGCAAACCGCTGCGCA
ACTGCCTGGTGACTGGGTACATGTATGCCACAGCACTCAATGGCTGTGGTATTCTGTCTA
TGCAAGCAAACAATTCAGCTGGCGCACAAGAATGCTAGTTGTAACTGATTGGGG

Homology of Contig U35_11042 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g26660.1	576	6e-125	protein\|NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi2g51830.1	573	2e-132
Arabidopsis v10	AT4G21490.1	580	4e-102	\| Symbols: NDB3 \| NAD(P)H dehydrogenase B3 \| chr4:11436495-11439326 REVERSE LENGTH=580