- Probe CUST_302_PI415269222
- Source Contig TA31381_4513
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_302_PI415269222 | Hv_44K_v2 | TGCCCGTGGTGTTCATCTTTCATCAGAGAGTTCAATGCAATGTTTCGTTGTGTGTCTCAC | 423 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.157 | 0.166 | 0.844 | 1.168 | 1.570 | 1.783 |
| Raw | 15112.377 | 23300.703 | 112126.233 | 214154.666 | 110220.000 | 139329.666 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11770.1 | 3004 | 3e-22 | 2871 - 2929 | 98 | 58 / 59 | plus | ABC00361 ABC00460 ABC00689 ABC00861 ABC29347 ABC37458 |
| JLOC1 | JLOC1_7835.2 | 3730 | 1e-22 | 3436 - 3494 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_7835.1 | 3174 | 1e-22 | 2880 - 2938 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC00554 | 788 | 1e-24 | 645 - 703 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC00460 | 2849 | 1e-24 | 2665 - 2723 | 100 | 59 / 59 | plus | ABC00460 |
| Harvest21 | ABC00861 | 868 | 5e-23 | 140 - 198 | 98 | 58 / 59 | minus | ABC00861 |
| Harvest21 | ABC00689 | 508 | 5e-23 | 432 - 487 | 100 | 56 / 56 | plus | ABC00689 |
| Harvest21 | ABC29347 | 168 | 2e-21 | 94 - 152 | 97 | 57 / 59 | plus | ABC29347 |
| Harvest35 | U35_37192 | 237 | 3e-25 | 161 - 220 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14484 | 1740 | 1e-24 | 1538 - 1596 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_14482 | 631 | 1e-24 | 488 - 546 | 100 | 59 / 59 | plus |
Contig Sequence (483 bp)
>TA31381_4513 483 Hv_44K_v2 GTACATCTTGGATCAAGTCCGTGCTTTGGAGAATGAGATGCTTCTGAGGATTAAGCAGCA AGGCCTTGACATAACTCCTAAGATCCTCATTGTAACCAGGTTGTTGCCTGATGCTGTTGG AACTACATGTGGCCAGCGGCTGGAGAAGGTCATTGGAACTGAGCACACTGACATTCTCCG TGTTCCCTTTAGAACCGAGAATGGGATCCTCCGTAAGTGGATCTCGCGTTTCGATGTCTG GCCATACCTGGAGACATACACCGAGGATGTTGCAAACGAACTCATGAGGGAAATGCAGAC CAAGCCTGATTTGATCATTGGCAACTACAGTGATGGTAACCTTGTGGCCACTCTGCTTGC CCATAAATTGGGTGTTACCCAGTGCTGCTTGCTGGTTCATGCCAGCCGCCTCGAATAAAC GCCTGCCCGTGGTGTTCATCTTTCATCAGAGAGTTCAATGCAATGTTTCGTTGTGTGTCT CAC
Homology of Contig TA31381_4513 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g09450.8 | 804 | 2e-79 | protein|sucrose synthase, putative, expressed |
| Brachypodium v1_2 | Bradi1g46670.3 | 748 | 3e-81 | |
| Arabidopsis v10 | AT3G43190.1 | 808 | 1e-67 | | Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808 |