barSeed - Barley Seed Development Database

Probe CUST_3029_PI390587928

Source Contig U35_6270

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3029_PI390587928	Hv_44K_v2	TGCAAGGGTTGTGTTTTACTGGCTGTTACGGTATCCAACTATAGTGAATGTTGGCTTTTT	931	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.480	1.307	1.235	0.892	0.363	0.398
Raw	4615.037	6478.140	5301.170	5866.507	866.761	1036.072

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54015.1	2659	7e-23	26 - 85	98	59 / 60	minus	ABC13506
JLOC1	JLOC1_34749.4	3171	4e-23	3014 - 3073	98	59 / 60	plus
JLOC1	JLOC1_34749.3	3200	4e-23	3043 - 3102	98	59 / 60	plus
JLOC1	JLOC1_34749.2	2826	4e-23	2669 - 2728	98	59 / 60	plus
JLOC1	JLOC1_34749.1	2776	4e-23	2619 - 2678	98	59 / 60	plus
Harvest21	ABC32262	264	3e-25	202 - 261	100	60 / 60	plus
Harvest35	U35_6270	994	3e-25	932 - 991	100	60 / 60	plus

Contig Sequence (994 bp)

>U35_6270 994 Hv_44K_v2
GGAGAGAGAAAGAGCAGCGAGAAGAAGACTGTCTGGGAGATGCACCAAGAAAAAATGAAG
GAAAAGCGGAAAGCTAGGAAGAGGTCGTCGAAGGATGATGATGATGATGACGATAGCAAC
GAAGATGGTGCTGATGAAGATGAAGATTTCTTTGAGGATGAAAAGTCTGATGAAGACGTT
AAGCCAATGAAGAAGCAGAAGGTTAAAGCCAAAGATAAAGAAAAAGGGAAAGGAAAGGAC
AAGCTTCCAGAGGAACATTTCGAACCAGAAGCAACTAAAGAAGAGTTGGAGCTCCTGGTT
GCTGATCAGGATGCAGGCAATGGTGCAAAGGGCTATAACATAAAACGCAAGAGTAAAAAG
GGCAAGAAGGGCAAGGATTCTGTCGAGGACAAACATCCTCATATTGACCTTACCAATGAC
AAGAGGTTTGATCCCATGTTCACGTCTCATCTGTTTGCGCTGGATCCTACTGATCCCCAG
TACAAGAGGAGTGCCGACTTCAAGCGAAAGCAAACTGGGAAGAAGGGTGTGCATGCAGGC
ACATTGGATAGTGAACCACCTGTGGAGGAGTCATCTCCGGGGAGTACATTGCCAGCTGAT
GATGCATCGACTAGGAAGACCAAGCAGAAACATGACGGGGCGTCTACGGAGAAGCTACAA
ATGCTATCTGCTGTTAAGTCCCTCAAAAGGAACCTCACAGCGTTCAAGAAAGGAAGCAGC
ACGAGTGAACGGTAGAGAAGATGATCGTCTTTGGCCTGATATAGCTTTCCTGATGAAAAA
TGCCTCAGTAGCCTTCAGAATAGGTTGAAGGTTTGATGATATGCCATTTTTGGATTTCGA
TAGCACAATGATCCGGTTGGACTAAAAATTATATTAGGCTAGTTAAATACCCTGAAGGTT
TTCTCAGTCGTTCATGTGGAACAGGCATGTTTGCAAGGGTTGTGTTTTACTGGCTGTTAC
GGTATCCAACTATAGTGAATGTTGGCTTTTTCTC

Homology of Contig U35_6270 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g25780.1	762	5e-54
Arabidopsis v10	None