barSeed - Barley Seed Development Database

Probe CUST_30288_PI390587928

Source Contig U35_23028

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30288_PI390587928	Hv_44K_v2	ACAGAGAACCCACTTAAACAACACATTATCTCCGACGAAGGCCAATTTGATGAATTCAAC	968	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.026	0.875	1.819	1.665	0.875	0.839
Raw	14.559	17.884	34.972	45.462	9.080	9.662

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363623	3083	2e-24	1325 - 1384	100	60 / 60	plus	ABC13616
MLOC	MLOC_10207.3	2141	2e-24	1064 - 1123	100	60 / 60	plus	ABC13616
MLOC	MLOC_10207.1	2045	2e-24	1075 - 1134	100	60 / 60	plus	ABC13616
MLOC	MLOC_10207.2	2060	2e-24	1075 - 1134	100	60 / 60	plus	ABC13616
JLOC1	JLOC1_6661.2	2367	8e-25	1094 - 1153	100	60 / 60	plus
JLOC1	JLOC1_6661.1	2352	8e-25	1094 - 1153	100	60 / 60	plus
Harvest21	ABC18755	1031	3e-25	969 - 1028	100	60 / 60	plus
Harvest35	U35_23028	1031	3e-25	969 - 1028	100	60 / 60	plus

Contig Sequence (1031 bp)

>U35_23028 1031 Hv_44K_v2
GGAGGAGACCACGTGCGGCTCGCCCTCGCGATCTCGGCGTCGGATCCCGCGGGGCTCGTC
GATCCGGACTCCGTTCAGATGCGCGCGGCCGAGCGCATCAGCCTGGGTGGCCCGGCTAGC
CGCGCCTGGGGACCGGACCACCATGGAGGCCCTCTCCGCCCGCTACTGGAACCACAACGT
CGTCAACTACGATGAGAAGCTCTCCGATGGGTTCTACGACGTCTGTGGCGCACCCATGGA
TCCGGGATTCCAGGTCAAATTCCCATCCTTGAGCAGCCTCAGGGCGATCCCTGTAGGGCG
AGATGTCGCTTATGTCGCCATTTTGGTGAACCGGGAGCGTGATCCCACGTTGAAGCGCCT
TGAGGGGACAGCAATTGCGATTGCTGCACAAAGTAGGGCAGAACGCGGTGGAATTGCGTC
AGCTGAGCTTGTACAGAAGATAGCTAGCCTAGTAGTTGATGCCATGGGTGGTGTGGTGGA
GGATGCTGATGCGATGAACAGGGAATGGTCCACAAAGAGCCGGCAGCTCTGTGCTGGGCT
AAACAGTATTGCCCTTCCTCTTGGTTCACTTGGAATTGGGCTCTCGCGCCACAGATCTCT
GCTTTTTAAGGTACTAGCTGACCGAGTTAATCTCCCATGCAAGCTTGTCAAAGGAATATG
TTATACTGGAACAGATGAAGGTGCTATTAACTTTGTTAAAATCGACTTTGACAGTGCTGA
ATATATTGTCGACTTAATGGGAGCTCCAGGCACCTTAATACCTTCAGAGATTTCTGTCAG
TCAATTTCAGGACTCCAACAATAGTCAACTGAGCAGTGACGCCATTGAAGAGAGTGTTGC
AGAACTATGCATAGCTCTTGAGCAGGTTAGTGGTGTATATGAGAGTAAAAGTGACATGGN
GGGGAAGTTCATCTGATCGTAATTCTGTCCTAGCACTTCGAACTCCACATTTGGAAGATA
CATGTCACACAGAGAACCCACTTAAACAACACATTATCTCCGACGAAGGCCAATTTGATG
AATTCAACATT

Homology of Contig U35_23028 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g12810.3	769	5e-139	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi3g08260.4	765	2e-159
Arabidopsis v10	AT5G11850.1	880	2e-65	Protein kinase superfamily protein \| chr5:3816632-3821024 REVERSE LENGTH=880