barSeed - Barley Seed Development Database

Probe CUST_3027_PI390587928

Source Contig U35_6272

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3027_PI390587928	Hv_44K_v2	CATCATGAAGATATCAGGAAGAGCTCGCAGTACCTTCTACCGTCGAGGAAGCCGTCGCTG	486	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56385.3	634	2e-24	480 - 539	100	60 / 60	plus	None
MLOC	MLOC_56385.2	2360	2e-24	592 - 651	100	60 / 60	plus	ABC18853
MLOC	MLOC_56385.1	2405	2e-24	994 - 1053	100	60 / 60	plus	ABC18853
MLOC	AK365354	2120	3e-21	493 - 552	97	58 / 60	plus	ABC18853
JLOC1	JLOC1_36460.1	2309	8e-25	722 - 781	100	60 / 60	plus
Harvest21	ABC17712	517	1e-24	459 - 517	100	59 / 59	plus
Harvest35	U35_6272	546	3e-25	487 - 546	100	60 / 60	plus

Contig Sequence (546 bp)

>U35_6272 546 Hv_44K_v2
GCAATCACTCATCCCATCCCATCCCATCCCTGTCTTGTCTGCTTCTCTTCTCTGCTCTGC
TTCTGGTGCGGGAGGCGATGAAGAGCCTGCTGGGGGAGGAGCGGAGCTTCATCATCGAGA
GCGACGACGACGACGACGACGAGGAGGACCCCACCCACAGGGACGGCGCCGGCGGCTCCT
CGTCGGACTCGTCGTCGTGCGCCAGCCCGCGCGGAGGGAGCGGCGGCGGCGGCGGCGACA
GCCAGCCCAACTCCTACACAAACCAATGGCCGCAGAGTTACAGGCAGTCGATCGACATTT
TGAGCAGCGTGCAGTCGCCGAGCCTGGGTTTTCTGGGGACCCCGACGCTCAGCAGGCTGT
CCAACTCCTTCCTCAACAGCTCCTTCCTCAACAACTCGTTCCGAGGCAAAACCCCTGAGG
TCATCTCCAACCTCGTCAAGCCGCTTATACGCCCGACAACAAGTGACGAGCAACAGCAAC
ACACAGCATCATGAAGATATCAGGAAGAGCTCGCAGTACCTTCTACCGTCGAGGAAGCCG
TCGCTG

Homology of Contig U35_6272 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None