- Probe CUST_30278_PI390587928
- Source Contig U35_38996
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30278_PI390587928 | Hv_44K_v2 | AACAAGGGCTTCTCGTTAAGCTTGCTGCATGACTCTGCCTCCCCTCATGGCGGGCTGTTT | 378 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.746 | 0.469 | 0.970 | 1.396 | 2.507 | 2.597 |
| Raw | 73.270 | 65.630 | 129.661 | 259.454 | 183.005 | 210.556 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364357 | 1799 | 2e-24 | 432 - 491 | 100 | 60 / 60 | plus | ABC08706 ABC08707 |
| MLOC | MLOC_12097.1 | 1837 | 7e-23 | 257 - 316 | 98 | 59 / 60 | plus | ABC08706 ABC08707 |
| JLOC1 | JLOC1_8093.1 | 1712 | 4e-23 | 258 - 317 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC35011 | 439 | 3e-25 | 379 - 438 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38996 | 439 | 3e-25 | 379 - 438 | 100 | 60 / 60 | plus |
Contig Sequence (439 bp)
>U35_38996 439 Hv_44K_v2 GTCACCGAGCGCGACTGCTAGGGTTCCTAGCCACCGCCGGCCCGCCGCCACTACCTCCGG GCCGAAGCCTCCGCCGCCCCCGCCCCCGCCCCGCTGCCGGCACAGTAGCCCCGCCAGCAG CGCCTCCCTCCTTCCTGTACTAGCCGCCGCCGCCGCCGCCGCCGGCGACCAGTCCATAGG CGGGCAGGGCGGCCGTCCACCTCGATTGTGCAGCTTGCACTCTGAGGCCGGCCAAGACGT TTACGCCCACCCATGGCGGGAACGATGATGGCCGTGACGGCCAAGGGCAAGAACTGCACG CTGGCCTCGGAGAAGAAACATGGGTGGGCCATCCCACCGCTTCCGGAGCTCCGGTTCCCT TGGGATATGCAAGAGGACAACAAGGGCTTCTCGTTAAGCTTGCTGCATGACTCTGCCTCC CCTCATGGCGGGCTGTTTG
Homology of Contig U35_38996 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |