- Probe CUST_30272_PI390587928
- Source Contig U35_11053
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30272_PI390587928 | Hv_44K_v2 | AGACTGCTGGTTTAAGGTCTACTAGGAACAAACTTGCTGATACACATTCATTGGAAAAAA | 202 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.402 | 1.243 | 1.075 | 0.829 | 0.633 | 0.546 |
| Raw | 304.930 | 378.711 | 320.455 | 338.879 | 102.758 | 96.379 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373995 | 2330 | 7e-23 | 1033 - 1092 | 98 | 59 / 60 | plus | ABC12804 ABC23073 |
| MLOC | MLOC_10734.4 | 2338 | 7e-23 | 2039 - 2098 | 98 | 59 / 60 | plus | ABC23073 |
| MLOC | MLOC_10734.1 | 3189 | 7e-23 | 2890 - 2949 | 98 | 59 / 60 | plus | ABC23073 |
| JLOC1 | JLOC1_7043.2 | 2602 | 4e-23 | 2303 - 2362 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_7043.1 | 2607 | 4e-23 | 2308 - 2367 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC23533 | 281 | 3e-25 | 203 - 262 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11053 | 282 | 3e-25 | 203 - 262 | 100 | 60 / 60 | plus |
Contig Sequence (282 bp)
>U35_11053 282 Hv_44K_v2 ACCTCCGTCTCCAATGATGATGGTGGGTATAGTCCTGTTGCACCTGGTACTGGTAATTTG CGAAGAAGCACAAGGAGGTCATGTGCATACACTGATGGTGGAGCAAGGAATGCTATCTCT CATTTGAAAAATTCTTCCCATGAAGCATCAACTAGTGGAAGACAAATTGGTGCAGATGGG CATGAGTGGGGATCACCATCAAAGACTGCTGGTTTAAGGTCTACTAGGAACAAACTTGCT GATACACATTCATTGGAAAAAAAGCCTCAAGTATTCTCAAAT
Homology of Contig U35_11053 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |