- Probe CUST_30268_PI390587928
- Source Contig U35_11058
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30268_PI390587928 | Hv_44K_v2 | GGTACATTTTGGATACGAGATGTGCTTTAGTACACCCTCTTTTGGAGAAGAGGTAAAAAA | 159 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.093 | 0.088 | 0.590 | 1.805 | 2.063 | 1.817 |
| Raw | 2.767 | 4.464 | 46.239 | 232.555 | 84.704 | 80.424 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375666 | 977 | 9e-22 | 886 - 943 | 98 | 57 / 58 | plus | ABC35324 |
| MLOC | MLOC_39502.1 | 657 | 9e-22 | 594 - 651 | 98 | 57 / 58 | plus | ABC35324 |
| JLOC1 | JLOC1_25759.1 | 769 | 5e-22 | 595 - 652 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC35324 | 227 | 3e-25 | 157 - 216 | 100 | 60 / 60 | plus | ABC35324 |
| Harvest35 | U35_11058 | 230 | 3e-25 | 160 - 219 | 100 | 60 / 60 | plus |
Contig Sequence (230 bp)
>U35_11058 230 Hv_44K_v2 GAGGCACCAACAGCGAGCAGGGTGTCGTCATACACTACTTTGTTAGAGAAGCTTATCACT CGAAGGCAGGAGACACCGCCTTTAGCTTTAGGACCATAATTTGGTCTTGTCATTTCTCTT TTGCAAACTGACCGGTTTCATCTTAATTTTGTTCCTTATGGTACATTTTGGATACGAGAT GTGCTTTAGTACACCCTCTTTTGGAGAAGAGGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_11058 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |