- Probe CUST_30267_PI390587928
- Source Contig U35_23030
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30267_PI390587928 | Hv_44K_v2 | CTTAGCTACCATGTTTTTCGCAAGAAATGTATGATCCACCAATGATGTGTGATATTTTTC | 356 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.415 | 3.471 | 1.349 | 0.515 | 0.112 | 0.033 |
| Raw | 8270.497 | 19300.303 | 6277.107 | 3945.186 | 297.185 | 88.932 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_212.1 | 451 | 6e-21 | 366 - 424 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01790 | 642 | 3e-25 | 544 - 603 | 100 | 60 / 60 | plus | ABC01790 |
| Harvest35 | U35_23030 | 455 | 3e-25 | 357 - 416 | 100 | 60 / 60 | plus |
Contig Sequence (455 bp)
>U35_23030 455 Hv_44K_v2 CGTCTGCCTGGCTGCCTACTACTGTATCGATACTTCATCGGCACCATTCATACTCACAAT GGCCAAGCACACCGCACCAGTACGCGCGGCCACGCTTCTCCTAGTCATATGCCTCCTCGC TACCCAGGCGCGATGCCGGATCATGGACGACGACGGCGTCGAGAAGATTAGTTTGCCCAA TGGGTTGTGCGTCCACGATGAGAGGTCATTCGCCTGCAAGGGCGAACGTTGCTATTGCTG CCGCGTGGGTTTGGAAGTTTGTTACTTGTCGATGGACGAGTGCAAGAGGGAGTGCGTCAA GAAAATGGGGCCGTCACCGGGGGCTGGGGGCGGCGGCGGCAACACCTCTCCGATAGCTTA GCTACCATGTTTTTCGCAAGAAATGTATGATCCACCAATGATGTGTGATATTTTTCAAAT AAGAAAGAACTATTGATCACCAAAAAAAAAAAAAA
Homology of Contig U35_23030 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |