barSeed - Barley Seed Development Database

Probe CUST_30265_PI390587928

Source Contig U35_23032

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30265_PI390587928	Hv_44K_v2	CCTGAGACATGGATGCAGATATGGTTTTCGTTGTTATGTTTGAATGTTAGTTTTCTTACC	732	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.882	1.851	0.932	0.929	0.563	0.998
Raw	194.595	286.146	132.842	201.963	42.442	85.945

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51725.2	2869	2e-24	2808 - 2867	100	60 / 60	plus	ABC21820
MLOC	MLOC_51725.1	2230	2e-24	2169 - 2228	100	60 / 60	plus	ABC21820
Harvest21	ABC21820	823	3e-25	32 - 91	100	60 / 60	minus	ABC21820
Harvest35	U35_23032	823	3e-25	733 - 792	100	60 / 60	plus

Contig Sequence (823 bp)

>U35_23032 823 Hv_44K_v2
GGGAGGGCCTACTTGAAGTTCTACCAGAGGTCTCTGAGGATGACCAAGGTCGATATGCAC
TTTGGAGTATCTTATCACGTATTCTGGCACAAGTGCAAGGAACCGAGTTGAACTCCTCGT
CCCTCGACCAGTTTGCGTCTCTGTTCTCAGGCAAGTTCAGCCTCATCGAAGATGACCTCG
ACAGTCATGTGGTTGATGAAGAGAAGTTAACACCTGAGGATGCTCTCGTGAAGGGATGGA
CATCGAGATGTCTCGTGGCAATCTCCTTCTTCATGGAGAGATGGATCGAGGAGAAGTCCT
CCCAGGGCAACGAAGACGACGCTCCACCGACTGGAGACTCCATCGACAATGCTCGGGAGG
TGCTGAGCTACTGCCAGAAGGCGCTCTGCTAACCGGAAACTCCACTCCACTGACAAGCTT
TGCTGTGGTTTGTAATCAACCAACGCTGCTGACCTGAGAGAATGCGGTATGTTAGCCGCT
GTGATTTTGGAACCGCGGGAGTCGGTTATAACCTACTGTTGTTTTAGACTACGGCAACCT
GTAAAGAAAATCGACGAATGGAGATTAAGTAGGGGCATGGGTGGGGATATAATATACGAG
TTTTGGGCGTGGATGGGGATACATTTTCTTTTGGGGATGTTCGATTGCCAAGTTTGATAA
ATTGCAAATTTGGTCTGAAGTTTTTCCTTGTATGGGTGAGAAGTATTTCTGTCATCCGAA
TTGATATGTAAGCCTGAGACATGGATGCAGATATGGTTTTCGTTGTTATGTTTGAATGTT
AGTTTTCTTACCTGCAAAAATTTTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_23032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g12320.1	594	6e-52
Arabidopsis v10	None