barSeed - Barley Seed Development Database

Probe CUST_30263_PI390587928

Source Contig U35_23034

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30263_PI390587928	Hv_44K_v2	TACAAGTTTGGATATTGTTGGGACAGATCAAAACCGAGATACTTATTGGGCTAGAATTTC	289	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_41257.1	652	2e-24	537 - 596	100	60 / 60	plus	None
MLOC	MLOC_41125.1	173	2e-24	67 - 126	100	60 / 60	minus	None
MLOC	MLOC_27876.1	298	2e-24	209 - 268	100	60 / 60	minus	ABC17168
MLOC	MLOC_240.1	229	2e-24	164 - 223	100	60 / 60	minus	ABC17168
MLOC	MLOC_31.1	201	2e-24	136 - 195	100	60 / 60	minus	ABC17168
MLOC	MLOC_26745.1	318	7e-23	254 - 313	98	59 / 60	minus	ABC17168
JLOC1	JLOC1_26911.1	248	8e-25	183 - 242	100	60 / 60	plus
Harvest21	ABC18203	728	3e-25	290 - 349	100	60 / 60	plus
Harvest35	U35_23034	728	3e-25	290 - 349	100	60 / 60	plus

Contig Sequence (728 bp)

>U35_23034 728 Hv_44K_v2
GAGGCCACGACCAACCCACGCTCGTGCGCTCGGCTGCTTCGTCCCGCGGCGCTACCTCGC
CCAGATCGCCGTCGTCGCGTTCTTCTCCGGCCGGCAAGATGGATGATGAAGAAGCCTTCT
TAGACATCATTGATTTTGGTTGCACACAAACGCAACCAAAGAGTCCAATTGGAGAGCAGC
CAACTCCATCAACTCAGCATCGTTCTGCAATAACAGAGAAAGGAAAATTCCACAAAGGAA
AAAATTGGTCTAGTGATGAGGACAAGGTTCTCATAGCAGCATGGGCAAATACAAGTTTGG
ATATTGTTGGGACAGATCAAAACCGAGATACTTATTGGGCTAGAATTTCAGAGTACTACA
ATAGACAGAAGGAATCATCATGGCCGGAACGAAATGATAATGCAATCAATTGCCGTTACA
CTTTCATTAACAGAGAGACCTCTAAATTTTGTGGTTGCCTTCAGCAGATTTTAAATAGGC
AAGAAAGTGGAAGGACTATAGAAGAAAAGACAAACGATGCACACATTTTGTTCAAGGAAA
TGGATCCTAAAAAAAAGAAGCCTTTCACATTGATGCATTGCTACATAGAGTTTTCGAAGT
ATCCAAAGTGGCAGACAAGAGAACTTGAAACTTCTGTGAAGAAACAAAAGAAGACCATTG
ATGCAAGTCCGGGCACAGCTACCAATGATCCGGCTGATGCATCCTCGGTACGTACTGATG
CTACCTCG

Homology of Contig U35_23034 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g18621.1	357	2e-79
Arabidopsis v10	None