barSeed - Barley Seed Development Database

Probe CUST_30261_PI390587928

Source Contig U35_23036

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30261_PI390587928	Hv_44K_v2	AAACAGGAAACTGGTGTGAAGTTACAATTTTGAGCAGGTTAGAGTTGTGTCCCTTTATTA	946	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.131	1.699	1.430	1.017	0.444	0.423
Raw	86.820	209.392	148.784	165.847	25.070	25.879

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64467.1	2207	7e-23	1965 - 2025	98	60 / 61	plus	ABC18049
JLOC1	JLOC1_42335.1	1878	4e-23	1629 - 1689	98	60 / 61	plus
Harvest21	ABC18049	1026	3e-25	21 - 80	100	60 / 60	minus	ABC18049
Harvest35	U35_23036	1026	3e-25	947 - 1006	100	60 / 60	plus

Contig Sequence (1026 bp)

>U35_23036 1026 Hv_44K_v2
GCAGCAGATGAGGAACAGGGACATTGTTGTTTGGAACGCGATGATCTTGGGGCTGGGCCT
GACTGGGCATGGTAGGATTGGATTTGCCCTTGTCGGCAAGATGGAGAAGTCAGGCATGAA
ACTGAATGACAACACTTTCATCAGCATTCTCTGCAGCTGTACCCATACCGGCCTTGTAAA
AGATGGACGGCGGTATTTCCATAACATGACTCAGTTATACAACATCACGCCTAGGATTGA
GCACTATGGTTGTATGGTCGACCTGCTCAGTCGCGCTGGGTTGCTCCAGGAAGCCCATCA
GCTTATTGATGATATGCCAATGCAGGCAAACGCTGTCGTGTGGGGAGCACTTCTTGGTGG
CTGCAAGATTCACCGAGACGCTGAGCTTGCAGAACATGTCTTGAAGCAGCTCATCCTGCT
AGAGCCCCGGAATTCCGGAAATTATGTCATGCTCTCAAACATATACTCTAACAGCAACAG
ATGGGAGGATGCTGCGAAGCTTAGATCGGACATGAAGGTGAAAGGGGTTGAGAAAGCCCG
TGCATATAGCTGGGTTGAGTTTAGTGGTAAGGTCCATGAGTTCCGTGTTGGAGACAAGTC
GCATCCCCAGATGGATCAGATTTACCAAAAGCTAGATGAATTAGGCATAGAAATGAAAAC
CATGGGTTACAAACCAACTACCGATGTGGTGATGTTCGACGTTGAAGATGAGGAGAAGGA
GCACACTCTGGTTTATCACAGCGAGAAACTTGCCATTGCATTTTGCCTTCTCAGTACCCA
ACCAGGGGAGGTCATTAGGGTCACCAAGAACCTTAGGGTTTGCACCGACTGTCACACTGC
TATTAAACTAATATCAAGGATAACTCATCGGGAGATCATTGTTCGGGATAACAACCGATT
TCATTGTTTTGAAGATGGTTGTTGCTCTTGTAATGACTACTGGTAGAAACAGGAAACTGG
TGTGAAGTTACAATTTTGAGCAGGTTAGAGTTGTGTCCCTTTATTACTANAATTTAGTCA
GCTAGA

Homology of Contig U35_23036 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g01836.1	646	0.0	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi4g44707.1	650	0.0
Arabidopsis v10	AT3G08820.1	685	5e-133	Pentatricopeptide repeat (PPR) superfamily protein \| chr3:2677122-2679179 REVERSE LENGTH=685