barSeed - Barley Seed Development Database

Probe CUST_30259_PI390587928

Source Contig U35_23039

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30259_PI390587928	Hv_44K_v2	TCCTCTTCAAAGAAACTAGTGGTTATGCCCTGCAACTGAGGGCTCTCTTCTACCAAAAAA	1178	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36500.1	2026	9e-22	12 - 66	100	55 / 55	minus	ABC19214
JLOC1	JLOC1_23506.1	870	5e-22	61 - 115	100	55 / 55	minus
Harvest21	ABC19214	1247	3e-25	1179 - 1238	100	60 / 60	plus	ABC19214
Harvest35	U35_23039	1247	3e-25	1179 - 1238	100	60 / 60	plus

Contig Sequence (1247 bp)

>U35_23039 1247 Hv_44K_v2
GCTCGCTATCTAGCTTGAGCATGGCAGCATGGAGCCCATAAATAGCAGAAGCATACTGAT
CAACACGCGGATCCAAACAAGAGATAGAGATAGAGATAGAGATAGAGATAGACAGCCGGA
CAAAGAGAGAGGGATGAAGGGAGAGAGCGGAAGCGCGCGCATGGCAGGAGGAGGAGGAGA
GCATGGAGCCAACGGCCTGCAAGAGCAAGACCACGCCGGAGCTCTGGAAGAAGGAAGAGG
AGGAGCGAATCACCCAGCAGGGTGCGAAAATTCAGAGCAAGATCTCATCAGCACCAGCAA
CCAGCCCATGATCTCCGTTCAATTCGTGCAGAAGGTCCTCGCCGAGATATTGGGGACGTA
CCTGCTCATCTTCGCCGGCTGCGCGGCGGTGGCCGTGAACAAGAGGACGGCCGGCACGGT
GACGTTCCCGGGCATCTGCATCACCTGGGGCCTGGCCGTCATGGTGATGGTCTACTCCGT
CGGCCACATCTCCGGGGCGCACCTCAACCCCGCCGTCACGCTCGCCTTCGCCACCTGCGG
CCGCTTCCCGTGGAGGCAGGTCCCGGCCTACGCGGCGGCGCAGGTGGTCGGGTCCACGGC
GGCGAGCCTCACGCTGCGGCTGCTGTTCGGGAGCGAGCCGGAGCACTTCTTCGGGACGGT
GCCGGCCGGGTCCGACGTCCAGTCGCTGGTGCTGGAGTTCATCATCACCTTCTACCTCAT
GTTCGTCATCTCCGGAGTCGCCACCGACAACAGAGCCATTGGTGAGCTCGCCGGTCTGGC
CGTTGGAGCTACCGTGCTGCTAAACGTGCTCTTTGCCGGGCCCATATCAGGAGCATCCAT
GAACCCCGCAAGAACCATCGGCCCGGCAATGGTTGCCGGCCGATACACCAGCATCTGGTT
GTATATCGTTGGCCCAATTAGTGGCGCTGTTGCCGGTGCATGGGCTTACAACCTCATCCG
GTTTACCAACAAGCCACTGCGAGAGATCACCAGGACTGGGTCCTTCTTACGAAGTGCAAG
GATGAGCTAGCTGATTTTCACAGTGTTATTGCTTGTGGGTAGTGAATTTCGATGACATGT
TGTAATTCTCCGATCGCATTGTAAATTTATTTGACTTTCTCTTCATTGTCTAATTTCACT
AGTAAGGATTGGGTCCCCTAATTCTAATTGTAATGATTTCCTCTTCAAAGAAACTAGTGG
TTATGCCCTGCAACTGAGGGCTCTCTTCTACCAAAAAAAAAAAAAAA

Homology of Contig U35_23039 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g11560.1	287	6e-141	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi2g32890.1	283	1e-148
Arabidopsis v10	AT4G18910.1	294	1e-102	\| Symbols: NIP1;2, NLM2, ATNLM2 \| NOD26-like intrinsic protein 1;2 \| chr4:10366211-10368179 FORWARD LENGTH=294