barSeed - Barley Seed Development Database

Probe CUST_30234_PI390587928

Source Contig U35_23047

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30234_PI390587928	Hv_44K_v2	GAACATGGTTTGCCTATTCTGAAAAATGTCCTCCTCCCAAAGATAAAGGGTTTCAACTGC	919	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.999	1.228	1.858	1.764	0.607	0.574
Raw	50.496	98.664	128.645	192.312	23.108	24.592

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250927.1	1751	2e-24	963 - 1022	100	60 / 60	plus	ABC19044
MLOC	MLOC_73341.1	2252	2e-24	1474 - 1533	100	60 / 60	plus	ABC19044
MLOC	MLOC_73341.2	2154	2e-24	1433 - 1492	100	60 / 60	plus	ABC19044
JLOC1	JLOC1_48829.1	1578	8e-25	772 - 831	100	60 / 60	plus
Harvest21	ABC17429	979	3e-25	920 - 979	100	60 / 60	plus
Harvest35	U35_23047	979	3e-25	920 - 979	100	60 / 60	plus

Contig Sequence (979 bp)

>U35_23047 979 Hv_44K_v2
GCACCCAATCCCCGCCTCCCTCCCTCCGGACACTCGCTTTCCTCCACCAGTTTTCCACGC
CCGCCCTCAGCCAAACCCCCACAACACACGCCCAGTCCAAATTCGCCACCGGCCGCCCGC
CCGCCCGCAGCGACCGCAAGCCTCCCTCCCCGCCGGCTTCCCCTCCCTCTCCGGTGAAAG
TCTAGATGGCTCCTTTGGTCCTTGGAATGTGAATTCCAGAAAAGAACAACTGTTGACCAT
TTAGTACTGCATGATGAACGGATCAACTGGTTCCCCAGGGAATCATGTGAATGGAAAGCA
AGTGCAAAGTGTTGACCCTCCTGGTCTTTCAAGTTTTAACAGTGGACCAAGACACCGTCC
GTTGACTGTGTTGAGACGCTGTCGCGGTGTATTATGTTTGGTGATTATGCCGGTGACTGC
ATGCATGATGATGGTTTACCTAGCCCCTATGACTACCTTCGTTGTACGGTTGTTCAGTGT
CCATTACAGCAGAAAGTGGACGTGCTTCCTTTTTGGGATGTGGTTAGCTATGTTTCCTTT
TTTGTTTGAGAAAATTAACAGGACCAGATTTGTTTTCTCTGGTGAAAAGGTGCCCCCAAA
AGAGTGTGTCTTGCTGTTTGCTAACCACAGAACTGAGGTAGACTGGATGTACCTGTGGGA
TCTTGCTTTGAGGAAAGGCCGTTTGCAGTCTATCAAGTACATCCTGAAGAAAAGTTTGAT
GAAGTTGCCTATTTTCAACTGGGCATTTCACATCATTGAGTTTATTCCAGTAGAGCGGAA
TTGGGAGGTTGACGAACCACTAATCAGAAGAAGGCTGTCTGAATTGAAGAACCCCAAGGA
TCCCCTTTGGCTTGCAGTTTTTCCAGAAGGCACTGACTATACTGAGAAGAAATGCATCAA
AAGTCAAGAGTATGCGGCGGAACATGGTTTGCCTATTCTGAAAAATGTCCTCCTCCCAAA
GATAAAGGGTTTCAACTGC

Homology of Contig U35_23047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g42270.1	398	7e-152	protein\|acyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g20650.1	400	2e-159
Arabidopsis v10	AT3G18850.1	375	9e-93	\| Symbols: LPAT5 \| lysophosphatidyl acyltransferase 5 \| chr3:6499529-6500840 REVERSE LENGTH=375