barSeed - Barley Seed Development Database

Probe CUST_30225_PI390587928

Source Contig U35_11072

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30225_PI390587928	Hv_44K_v2	TTTTTGTCTGGAGCTACTTGGCTGCTGTTGCAAAAGATTGTCTTGCACTTGAGATCCCGT	488	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69036.2	2906	2e-24	2370 - 2429	100	60 / 60	minus	ABC02804 ABC02809 ABC02810 ABC02811 ABC50535
MLOC	MLOC_69036.1	2969	2e-24	2402 - 2461	100	60 / 60	minus	ABC02804 ABC02809 ABC02810 ABC02811 ABC50535
JLOC1	JLOC1_45728.1	2939	8e-25	510 - 569	100	60 / 60	plus
Harvest35	U35_11072	563	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_11072 563 Hv_44K_v2
GAAAAGGAAGAAACTCAAAACACTAGTAAAACCCTAGCCCACCGGAGGGAGCGCCGAAAA
AAGGCCGGCTAGTCGGAGAGCTTGAGGTGGCTGCAGCACAGCTCGTCCGCCGCCAAAGAT
GTTCTCGCCGGCGATCAGGAAGCCCCACCTCCACCGCAGGGAGAAGGAGGAGGCGACCCC
TTCACCCCCTCCTCCTGCTCCCGTCCACTCCCCTTCGCCCGGTGGATTCGCCCTCTCCGA
CCGCCCCGCCACTGGCACCCCGGCCCCATGGACCTCCTCCTCCCTCCTTGCCAGGATTTC
GACATCAAAGCAGACAGACAGGGCTGGCGATTCTGGCCAGATCCAACCAGTGCACGTAGC
AGAGTTTCCCCAAGTTGTGAGGAATGCACAAGCCAACCTTCTGCAGAAGAATTTTGCAGG
CAAGAGTATGCTTGTAGGCGGCATTGACAAAGAAACATCCCTTGCATGGATGATATGTGG
AAATGAGCTTTTTGTCTGGAGCTACTTGGCTGCTGTTGCAAAAGATTGTCTTGCACTTGA
GATCCCGTCTTCGCTTGTGGGAG

Homology of Contig U35_11072 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12450.1	1291	3e-68	protein\|nucleoporin, putative, expressed
Brachypodium v1_2	Bradi1g69360.1	1294	4e-67
Arabidopsis v10	None