- Probe CUST_30219_PI390587928
- Source Contig U35_11076
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30219_PI390587928 | Hv_44K_v2 | AACTCAATGGCCTAATCGATGCTGCAGACAACATCATGCTGAAATTGTGGCTCAGTTGGA | 489 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.236 | 1.104 | 1.087 | 0.652 | 0.294 | 0.226 |
| Raw | 323.271 | 412.328 | 387.125 | 356.011 | 58.524 | 48.954 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_62969.2 | 2838 | 7e-23 | 2187 - 2247 | 98 | 60 / 61 | minus | ABC00332 |
| MLOC | MLOC_62969.1 | 3750 | 7e-23 | 3161 - 3221 | 98 | 60 / 61 | minus | ABC00332 ABC00945 ABC00953 |
| JLOC1 | JLOC1_41234.1 | 3803 | 4e-23 | 584 - 644 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_11076 | 553 | 3e-25 | 490 - 549 | 100 | 60 / 60 | plus |
Contig Sequence (553 bp)
>U35_11076 553 Hv_44K_v2 AAAAAACCAAATCCCGCTGCCTCCGCCCCTACGCTCCTCCACCCCGCGCCCAACCCTAAG ATTCGCCATTTCAAAAAAGAAAACCCCTAAGATCCGGCGCACCAACCCTAAGATCCACCG CCCCTGGGCTCCTCCTCCGCGCGCCCCCGCACCGCCATGGCCACGCGCGACCGTGCCGCC CGCGCGGCGATGCCCCGCCTCAAGGAGAACGACACCCAGTCCAAGCGCCAGCGCCCGGCC GCGGGCACGGCACCGCGCCCGCCGCTCTCCACGGCCTCGCAGAACGCCGCCGCGCCTCCC CCCACGGAGGCCCCCATCGAGTTCGCCGGGAGGGAAGACGTCGACGCCCTCCTCAACGAG AAGATTAAGGGCAAAAACAAGATGGACTACAAGGGAAGGAGTGAGCAGATGATCGAATAC ATCAAGAAGCTGCGTGCCTGTATTAAATGGTTGCTTGAGCGGGAGGACGCAACCTTGCTG AAATCGGGAAACTCAATGGCCTAATCGATGCTGCAGACAACATCATGCTGAAATTGTGGC TCAGTTGGAGTGC
Homology of Contig U35_11076 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |