barSeed - Barley Seed Development Database

Probe CUST_30218_PI390587928

Source Contig U35_47005

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30218_PI390587928	Hv_44K_v2	ATTGAATTCGGAGATGACACTTGGGACTGCTCGTATGTACCTGGATTTTACAACTACAAA	454	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65965.2	1923	2e-24	672 - 731	100	60 / 60	plus	ABC47771
MLOC	MLOC_65965.1	2162	2e-24	988 - 1047	100	60 / 60	plus	ABC47771
JLOC1	JLOC1_43448.1	1198	8e-25	207 - 266	100	60 / 60	plus
Harvest21	ABC47770	517	3e-25	455 - 514	100	60 / 60	plus
Harvest35	U35_47005	517	3e-25	455 - 514	100	60 / 60	plus

Contig Sequence (517 bp)

>U35_47005 517 Hv_44K_v2
GGGTCATTGTCATTGGCAATACAAACCCAGTGAAACCAAATAATATCGAGGCCAATGATA
CGGATGATGATAGGTTAGCTGATTTCTCCAGGCATGCAAGAAAGGCTTATGTGAGGCTTC
AAGAGGAAGGAAAGATAGATAATGCTGGCAAAGGCTTAGATAATGTGCAGAAAACACCAG
TCCCTCAGGTGCAACATATCCGAGTATCCGCAATGCTCCTTGCTTCTGAAAGTCAGTTTT
TCCATAAGCTTTTTACAAATGGAATGAAGGAGTCTAATCAGAACGTAATTGAACTACAAG
TGTCGGAAGCAGAGTTGGAGCCGGTGCTGGAAATAATCAAGTTTATTTATAATGGAGAAT
TTAGCAAATCGGACCCGAAGAGTTTGCTTGCAACTCTACTTGCTGCTGATAAGTATGAAG
CTACAACAGCTATCAGTGAGTGCGGAGAATTATTATTGAATTCGGAGATGACACTTGGGA
CTGCTCGTATGTACCTGGATTTTACAACTACAAATTC

Homology of Contig U35_47005 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None