- Probe CUST_30216_PI390587928
- Source Contig U35_47006
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30216_PI390587928 | Hv_44K_v2 | CTTGTCAGTTTCTTAGTTTCAGTTGTGCGGTTGAATCAGTAATTGGTTGTTCCCCGCAAA | 14 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.571 | 1.623 | 1.133 | 0.666 | 0.160 | 0.174 |
| Raw | 226.137 | 363.173 | 220.624 | 209.903 | 16.428 | 19.906 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65965.2 | 1923 | 3e-21 | 1721 - 1780 | 97 | 58 / 60 | plus | ABC47771 |
| MLOC | MLOC_65965.1 | 2162 | 3e-21 | 2037 - 2096 | 97 | 58 / 60 | plus | ABC47771 |
| Harvest21 | ABC47771 | 537 | 6e-22 | 102 - 161 | 97 | 58 / 60 | minus | ABC47771 |
| Harvest35 | U35_47006 | 537 | 6e-22 | 102 - 161 | 97 | 58 / 60 | minus |
Contig Sequence (537 bp)
>U35_47006 537 Hv_44K_v2 TTTTTTTTTTTTTTTTTGCGGGGAACAACCAATTACTGATTCAACCGCACAACTGAAACT AAGAAACTGACAAGGTACAAAACAAAAACTGTGTTTACATGTTTGCGGGGAACAACCAAT TATTGATTCAGCCGCACAACTGAAACTAAGAAACTGACAAGGTACAAAAAGAGGTAACAA CATAGAATCAATGTACTGTACAGTTTTTTTTTTCAATCAAAAAGAACTTGGATAACATCA TTCTGACTACCTAACCTGCATTAGCTAGCCAGCCCCAGTCTTTACTTTGACTCTTATGTG GATTCTGCCATCTATAACATACATGCTCCCGTCGCCAACTAGCTGCGCCCACGGGCACGA GAACAGGTCCGCCATTCCGTAGGTGTTGCCATTTGTAAAACCCCGGTTGAATCTGAGCTT ATTGAAAAAATCTCCAGAAGGCCGCTGCCTCACAGCAAAGTTAACATTCAGATTAACTGG TGTCTGTCTCAAATGATTGGTACCAAGAAACAAACCGAGTGCCATGGGCGCGCTGGA
Homology of Contig U35_47006 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |