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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30215_PI390587928Hv_44K_v2GCCTCTTGTATTTTGCTTATGATGAACCTCCTTTTCCATTTAATTCTTTTGTAAGGCAGA583GeneList: lightcyan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8782.2392.9183.1540.8360.671
Raw 9.07738.13440.20068.9115.5284.852



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_60488.178692e-245164 - 522310060 / 60minus ABC18459 ABC26738 ABC30536 ABC34594 ABC37694
MLOCMLOC_60488.290672e-245158 - 521710060 / 60minus ABC18459 ABC26738 ABC30536 ABC34594 ABC37694
JLOC1JLOC1_39449.319048e-251691 - 175010060 / 60plus
JLOC1JLOC1_39449.226828e-252469 - 252810060 / 60plus
JLOC1JLOC1_39449.137778e-253564 - 362310060 / 60plus
Harvest21ABC345945793e-2567 - 12610060 / 60minusABC34594
Harvest35U35_110787093e-25584 - 64310060 / 60plus



Contig Sequence (709 bp)

>U35_11078 709 Hv_44K_v2
AACCCACTTGCATGGCACTCGGTGAAAGCGGTTTTTACAAAGGCAAGATTTGAAGATTAT
CCATCTGAAAGAGCATGTCAGATAAGACCACCATCAGAAGCAGCAATGCCACAAGTGAGG
TATCTTACAATATCTATATGTGCTATTGTTGATAGTGTTGCTTATGTTGACTACCTGTGT
TGGATTTAGAGTATTGTGATGTATGTTTCTCATCAATGGAGGCTCTTGAAAGTTGGAGAA
CACTGCATTTGTCTTGGTGTTTTGATTTGTCTTCTGCAAGCACATGAAGCTGTCCTTGTG
ATTGCATCCTCTTGCGCCTGAATTCTATCATCTCTTCTATCGACTCAAGAACCATAAAGT
TTCAGCGGCCTCCTGTGTTTAGCTTGTTATATGAACTTATTTTTCCATTTCTTTGTGCTG
TAAGGAAGTATGTAATTATGATGTACTGCTAGCAGCCTGCTGGTTAATTTTCCTTGGCAT
TTTGAATCTTCCTCGGCATGAAGCTCTCATTGTGATTGTTCCCACTTATGCCTGAATTTT
ATTATCACTTCTGCTGATTGAAGAAACATTCAGTTTCTGCTGCGCCTCTTGTATTTTGCT
TATGATGAACCTCCTTTTCCATTTAATTCTTTTGTAAGGCAGAATATGTGAACTTTGCTA
TTTATTTGTTTTGTAAGGCAGAGTATGTAATTAAAAAAAAAAAAAAAAA



Homology of Contig U35_11078 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None