barSeed - Barley Seed Development Database

Probe CUST_30211_PI390587928

Source Contig U35_23051

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30211_PI390587928	Hv_44K_v2	GGTTTGGATAAATGTTTTACGTAATGTGTTACATGGACCAATCAAATTAAAGTCTGGAGG	703	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50357.1	1585	2e-24	1384 - 1443	100	60 / 60	plus	ABC17447
JLOC1	JLOC1_32142.1	1466	8e-25	1390 - 1449	100	60 / 60	plus
Harvest21	ABC17447	769	3e-25	704 - 763	100	60 / 60	plus	ABC17447
Harvest35	U35_23051	769	3e-25	704 - 763	100	60 / 60	plus

Contig Sequence (769 bp)

>U35_23051 769 Hv_44K_v2
CCGGAGATCAACCTCCGGACCGACATCGTTGAAGATCAGGTTGGCGGGCCGTCAGCATCA
CGCCGCCCCATCTTGGCCTTCTTCGCTGGCGGTGACCATGGCCCCGTTCGTCCACTGCTC
CTGCAACACTGGAAGGGCAAGGATGCAGACGTGCAGGTGAGCGAGTACCTGTCCCGGGGC
GTGTCCTACATCAACGTGATGCGGCGGAGCAAGTTCTGCCTGTGCCCCAGCGGGTACGAG
GTGGCCAGCCCGAGGGTGGTGGAGGCCATCTACTTGGAGTGCGTGCCGGTGATCATCGGC
GACGACTACGTGCTGCCCTTCAGCGACGTGCTCAACTGGCCCGCCTTCTCGGTGCGGGTC
GCCGTGGCGGACATACCCAACCTCAAGACCATCCTCGCCGGCGTGTCTCCGCGGCAGTAC
ATACGAATGCAGCGCCGGGTGAGGACCGTGCGCCGGCACTTCATGGTCAACGGCCCGCCG
CGCCGGTTCGACATCTTCCACATGATCCTGCACTCCATCTGGCTCAGGAGGCTCAACATC
AGGCTCCATGGACAAGACTGAGATATTCTTGGGTTTCCCTTCTTTTAGGGAGCGGTCTAA
CAAGCAGTCAACTGGTTTGTTTGTGTCCAGGCCAAATTTCCTGTCCAGTTGTGATTTGAC
ACATTTCAACCGACCTAGTTTTGCATGGTAAATATTTTTGTTTGGTTTGGATAAATGTTT
TACGTAATGTGTTACATGGACCAATCAAATTAAAGTCTGGAGGATGAAG

Homology of Contig U35_23051 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g09050.1	607	4e-94	protein\|exostosin family protein, putative, expressed
Brachypodium v1_2	Bradi1g54950.1	549	1e-91
Arabidopsis v10	AT5G03795.1	518	2e-81	Exostosin family protein \| chr5:1007554-1010373 REVERSE LENGTH=518