barSeed - Barley Seed Development Database

Probe CUST_3020_PI390587928

Source Contig U35_6279

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3020_PI390587928	Hv_44K_v2	TAATGACACCTTTGCCCTCTTTGTTTAGGGCATGTTTGAATCACGGGAAATTTTCCCGTT	866	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.202	0.421	0.953	1.648	1.050	1.523
Raw	23.582	78.608	152.685	418.158	91.163	147.059

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359369	1949	2e-24	1839 - 1898	100	60 / 60	plus	ABC15088
MLOC	MLOC_69476.2	1344	2e-24	265 - 324	100	60 / 60	minus	ABC15088
JLOC1	JLOC1_46032.8	1328	8e-25	940 - 999	100	60 / 60	plus
JLOC1	JLOC1_46032.6	2188	8e-25	1800 - 1859	100	60 / 60	plus
JLOC1	JLOC1_46032.5	1658	8e-25	1270 - 1329	100	60 / 60	plus
JLOC1	JLOC1_46032.4	2405	8e-25	2017 - 2076	100	60 / 60	plus
JLOC1	JLOC1_46032.3	2145	8e-25	1757 - 1816	100	60 / 60	plus
JLOC1	JLOC1_46032.2	2352	8e-25	1964 - 2023	100	60 / 60	plus
JLOC1	JLOC1_46032.1	1604	8e-25	1216 - 1275	100	60 / 60	plus
Harvest35	U35_6279	926	3e-25	867 - 926	100	60 / 60	plus

Contig Sequence (926 bp)

>U35_6279 926 Hv_44K_v2
GCGGATTCGCTGCCGAGTAGGACGAGGGAGGGAAGAGCCCCTGACGATGTCGGTGCCGGA
GGCGGGGCAATCGGCGGGGAGGGATGAGCAGGAGATGGACGATTACGAGCAGCACCAGAC
CAGAGTGCTCATGGCGCTGATGCAGGGCTTATGCGCTGCGAGGTACCGCAAGGCCGACAA
CACCCCCTGCCTCGTCGACCAGGGCCTCTACTTGGGTTCTGTTGGAGCAGCACTGAACAA
CGAGGCTCTGAAGAGCTTGAACATCACCCACATCTTGGTTGTTGCCAGATCACTGAATCC
TGCCTTTCCAGCAGAATTTACGTACAAGAAGATCGAGGTACTTGACAGCCCAGACACTGA
TTTGGGAAAGCATTTCAGTGAATGCTTTACTTTCATAGATGAGGGTATCTGCACTGGTGG
CAATGTGTTGGTTCACTGCTTTGCAGGTCGGTCGCGGAGTGTCACAGTTGTTCTTGCATA
TCTTATGAAGAAGCATCAGATGAACCTGCAAAGTGCCATGTCACTAGTTAGAAGCAAACG
ACCTCAAATAGCACCCAATGCGGGCTTTATGTCCCAGCTGGTGAACTTCGAGAAGTCTCT
GCAAGTGGAGCAGGGAAGAAGAATGTTGCAATCAAACTAACTATAGGTGTAAATATCGAG
AACCCGCTGTCAATAGCTTCTGTACTGCATGTTATCGCATCCATAAATCAAACAAGGCCG
TTGTGACTGGTATGATTTCTGGTCATCTTATTATGCTCCTAATTGATGATGTGATGTTCA
AGGGTAATTGTTAGCCCACAGAATCAGCTCTACAAGAATGCAGATGATACAGCAGTCTCC
CCTGTAATAAATGTTCCCTGTAATGCTAATGACACCTTTGCCCTCTTTGTTTAGGGCATG
TTTGAATCACGGGAAATTTTCCCGTT

Homology of Contig U35_6279 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g29469.1	200	5e-105	protein\|dual specificity protein phosphatase, putative, expressed
Brachypodium v1_2	Bradi2g13400.2	198	7e-119
Arabidopsis v10	AT3G23610.3	228	4e-56	\| Symbols: DSPTP1 \| dual specificity protein phosphatase 1 \| chr3:8478280-8479651 FORWARD LENGTH=228