barSeed - Barley Seed Development Database

Probe CUST_30204_PI390587928

Source Contig U35_11760

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30204_PI390587928	Hv_44K_v2	TGTTCCTTGCTACTATTTTATCAAGCAAGCTCTTCCTGCCTTAGTGCCAATGCTGCTGGA	18	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11530.1	3887	2e-24	2574 - 2633	100	60 / 60	minus	ABC07846 ABC19048
MLOC	MLOC_74748.1	3932	3e-21	1333 - 1392	97	58 / 60	plus	ABC07846 ABC19048
JLOC1	JLOC1_7640.1	4193	8e-25	1346 - 1405	100	60 / 60	plus
JLOC1	JLOC1_49835.1	3892	2e-21	1286 - 1345	97	58 / 60	plus
Harvest21	ABC22266	579	3e-25	19 - 78	100	60 / 60	plus
Harvest35	U35_11760	581	3e-25	19 - 78	100	60 / 60	plus

Contig Sequence (581 bp)

>U35_11760 581 Hv_44K_v2
GTTTACAGCTGACTCTGATGTTCCTTGCTACTATTTTATCAAGCAAGCTCTTCCTGCCTT
AGTGCCAATGCTGCTGGAGACTCTCCTCAAACAGGAGGAAGACCAAGACTTGGATGAAGG
TGCTTGGAACCTTGCAATGGCTGGTGGTACTTGTTTGGGCCTGGTGGCGAGGACTGTTGG
GGATGATGTTGTTCCTCTTGTGATGCCTTTTGTTGAGGAGAACATAACGAAACCTGAATG
GAGGCAAAGAGAGGCTGCAACATATGCTTTTGGATCCATTCTGGAGGGTCCATCAGCTGA
TAAACTGGCCCCTCTAGTTAATGTCGCCTTGAATTTTATGTTGTCTGCGTTGTTGAAGGA
CCCAAATAACCATGTGAAGGACACCACTGCTTGGACCCTCGGAAGAATATTTGAGTTTCT
TCATGGTTCTGCACTTGAAACTGCTCCTGTTATTACAGCTGAGAACTGTCAGCAAATACT
TACTGTGCTACTTCAAAGCATGAAGGATGTGCCAAATGTGGCAGAAAAGGCATGTGGGGC
ACTCTATTTCCTTGCTCAAAGCTATGTGGATGCTGGATCGG

Homology of Contig U35_11760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g38110.1	873	1e-124	protein\|importin subunit beta, putative, expressed
Brachypodium v1_2	Bradi1g35630.1	873	1e-127
Arabidopsis v10	AT5G53480.1	870	2e-104	ARM repeat superfamily protein \| chr5:21714016-21716709 FORWARD LENGTH=870