- Probe CUST_30200_PI390587928
- Source Contig U35_11765
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30200_PI390587928 | Hv_44K_v2 | TACAGCAGTTGTGGAATTTTTGTATGCAATGCCGTCCAGTGTACAGGTTGAAACAGCTCG | 560 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.360 | 1.800 | 1.547 | 0.973 | 0.453 | 0.422 |
| Raw | 74.564 | 156.856 | 114.263 | 110.540 | 18.151 | 19.001 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_77800.13 | 4464 | 2e-24 | 1395 - 1454 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_77800.3 | 5332 | 2e-24 | 2384 - 2443 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_77800.14 | 4211 | 2e-24 | 1263 - 1322 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_77800.6 | 5525 | 2e-24 | 2456 - 2515 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_77800.11 | 5532 | 2e-24 | 2463 - 2522 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_77800.7 | 5392 | 2e-24 | 2450 - 2509 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_77800.8 | 5398 | 2e-24 | 2456 - 2515 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_77800.9 | 5497 | 2e-24 | 2555 - 2614 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_77800.4 | 5653 | 2e-24 | 2584 - 2643 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_77800.5 | 5548 | 2e-24 | 2479 - 2538 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_51867.5 | 5437 | 8e-25 | 2891 - 2950 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC50258 | 665 | 3e-25 | 46 - 105 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_11765 | 665 | 3e-25 | 561 - 620 | 100 | 60 / 60 | plus |
Contig Sequence (665 bp)
>U35_11765 665 Hv_44K_v2 GTTGTATTGCTTTGTGAGAGGTGGTTTCTTCCTTCGAGCAATGGAAGTTATAGAATTGAT GGAAAGCTCCAAGCTGTTTATAGACAAATACAAGTACAAGTCCCTGTGGCTTAAATATCA TAGAACATTGTATAAAGGTAAGGCTCCCAAGGTGCAAACAGAAGCTCAACTGATAAGGAG AGAAGCAGCACTTCGTTTCAAGAAATGGATTGGGTTGACATGAAAGCGAGATTTTGAAAG CCATAGTTGTTTTGAGACCAGCATGGTTGAAGACCAATGTATGGATGCCTCTTGTCTTTG GTCCTTCCCTTGTCCCCTCCCCATCTCATGATCGGGCCAGATTTTCCCGTGAAGACAGAC CTGCACGAGGATGATGAGTGTGGTTTCTAGCTGTGCCAGCCACCATGTTACAGGAACAAA TTGCTCGACAGATCGCGATTCTCCCAGATGTAATTTCTCTACTGGTATGTTGTTTTTTAG TTGAAAGTTCTACAATGTCCATTTGTACTACTGAAATTGAGCCATACATGTAAAACCTGA GATTAGATGTACATGAACCATACAGCAGTTGTGGAATTTTTGTATGCAATGCCGTCCAGT GTACAGGTTGAAACAGCTCGTTGGGCGGAAGGATGATGCGGGCCTGCAAGTATATATAAT AAGAA
Homology of Contig U35_11765 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |