barSeed - Barley Seed Development Database

Probe CUST_3019_PI390587928

Source Contig U35_6280

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3019_PI390587928	Hv_44K_v2	ACAATACGGGACTTGTGCAAGAAAACATGGGCCTCGCTTACCCAGTATTTTGTGCGTAAA	928	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.725	1.861	1.076	0.777	0.369	0.459
Raw	5298.797	8798.247	4494.290	5177.983	859.413	1151.266

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4549.1	1210	2e-23	11 - 68	100	58 / 58	minus	ABC14404
JLOC1	JLOC1_2845.1	1519	1e-23	1031 - 1088	100	58 / 58	plus
Harvest21	ABC14404	1002	3e-25	929 - 988	100	60 / 60	plus	ABC14404
Harvest35	U35_6280	1002	3e-25	929 - 988	100	60 / 60	plus

Contig Sequence (1002 bp)

>U35_6280 1002 Hv_44K_v2
CAACCATCTACCTCTTCCGAAAGAGTACTTGCAGATGCTGTTGGAACTGATACTCCACTT
ACAGTCAGTCTAGAAAGACCTCATGGTAAAGGCACCATAGAATCTGGCTCGACTACCGGA
CGTATACCAGTGGCAGACAATATTTCCAAGTGTGCTGCTGTTTCTGTTCACCCCAAGTCA
AGCCAGACAGCTTGGAAAATACTCCAGCATCTTGAGAGGACAATTCCATCCCCTACAGTA
AAGCCAGAGCTAAGGCGACCTCCAAAGAGAATTATTCCCCCTGTTGTCATCAGCAGCCCG
TATAAAATGCCTGATCCCGTCACTAGCTATGGCCCCAGACAGAACAGCCTCAGTGAGCGT
GGCAGTGCTTATCAGGCAATTTCAAATGTGAAGAAGGTTCAGGAACCCCCAAGCAGCTCC
AATTGTGAGGAGGAGCCAGCTCCAAAAGTCCAGAGCCCAGTGGCCACCCCAGAAGTTGCT
GAGATGACCAGCTCACAGCATCCTTCAAAACCCGACGTGGCAACTGCACCAGCTGCACCA
GTTTCCAACAAAAGCACAACCAATGGTTTCATGTTCTCATTCCCTGTCACCAAAACCTCA
GTCTCGCTTCCAGAACCGCCACCCACGCCTACTTTCTTCTCGCCGCCAAAAAAGAGCCTG
CCAGCCGGCATCCAAGATATCCCCAAGTTCACCTTCGGCTCATCAAGTTCTACGGATAAC
CTCGTTTTCTCCGTCGATTCGGTGAGCGGTTCTGCTGGGGCGGATGAAGTGGCTCCAACC
TTCAAGTTCGGGTCTGACAAGAAGCGAGAGCTGTCCTTCAATTTGGCTGGCAAAGATGCA
GTTGTCTCTTAGAGACGGACAACAGGCTCTGCCATTTGAACCCGCTTGCTCTTGTTATTT
GCTGGGACGACGGCACCATTTGTAACTGACAATACGGGACTTGTGCAAGAAAACATGGGC
CTCGCTTACCCAGTATTTTGTGCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6280 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40460.1	647	6e-59	protein\|expressed protein
Brachypodium v1_2	Bradi1g36467.1	634	1e-92
Arabidopsis v10	None