barSeed - Barley Seed Development Database

Probe CUST_30199_PI390587928

Source Contig U35_11766

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30199_PI390587928	Hv_44K_v2	CTGGTTTTGTTCGCTTTGATTGCCATGTTGCTGCTGGGTAGAAAAACCGATTGAAGTATC	331	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12824.2	2174	2e-24	359 - 418	100	60 / 60	minus	ABC08988
JLOC1	JLOC1_8622.1	2188	8e-25	1733 - 1792	100	60 / 60	plus
Harvest35	U35_11766	618	3e-25	332 - 391	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_11766 618 Hv_44K_v2
GGGGTAGCACTGCATTTTGGACAATTGTACATACGTTCAGAAAATTTGAATCTCTTGGAT
ATCATATATTTTTGGCTTTCCCTTCAGTGTCCTAGAAAGAATAACTGTTGCATTTTTGTT
CATGTTGGCCTCTAACTTTGAAAATATTCCCACCGTATTTGGTTAATAGTAAATATTCCC
TTTTTTTTGCAAATGGTGATCCCAGAAGTGCACGTGCATCCATGCTTTGTTTTATTTCTG
TGCACACTCCCTGTACTGAAATTGTATTTCTGTTGAAATAAGTGTGTATTTGCATGTTAC
AGCAATATATGATGTTCCGTTCCTCGAACTTCTGGTTTTGTTCGCTTTGATTGCCATGTT
GCTGCTGGGTAGAAAAACCGATTGAAGTATCAAAAGGTTGCTTCAACGTGGAACTGATGG
ATGGGCGTGAGACATGGTGACGAGCTACTGTTGTGGCCGGCTATTATTTTGTTTATGGTT
GGTGGTGGTCAGCTGACTCATACTGTCTTATGCCAGTACCTATGTTGGTGTCATGTCTAG
AAAATGTGGCGTGGTACTGCTGACTATGACTTGAATTTCTGTTTCTTCTGCTCATTGAGT
TGGTCTTCAAAAAAAAAA

Homology of Contig U35_11766 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None