barSeed - Barley Seed Development Database

Probe CUST_30194_PI390587928

Source Contig U35_23742

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30194_PI390587928	Hv_44K_v2	AAGAAGCATTTCTATGGCGACGACTTGGATGCAGATGAAGTGAGATGCTGCAAGCATTCA	879	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69561.2	3455	7e-23	1434 - 1493	98	59 / 60	plus	ABC12925
MLOC	MLOC_69561.1	3197	7e-23	1378 - 1437	98	59 / 60	plus	ABC12925
JLOC1	JLOC1_46097.1	3102	4e-23	1210 - 1269	98	59 / 60	plus
Harvest21	ABC18835	1050	3e-25	880 - 939	100	60 / 60	plus
Harvest35	U35_23742	1050	3e-25	880 - 939	100	60 / 60	plus

Contig Sequence (1050 bp)

>U35_23742 1050 Hv_44K_v2
GCCCCCCAGTCGCTGCTTCTCCTGCCGTCCGACGGCGCCGACGCGGCCGCCTACCTGAAT
GCCGCGCCGGCTCCCCTGCTGCCTGCCTCGGCCGACACCGCGTCGCCGCCGCCGCCACCC
GGAGACGCCTCGGCCCCCTCACCAGCCGCGCCGGACGACTCGGAGGTGTTCTCCGACATC
GTGCTGGGCTACATCAACCGCATGCTCATGGCCGAGGACATCGACGAGAAGTTCGACCAC
TACCCAGCCCACCCGGCGCTGCTCGCCGCCGAGAAGCCCTTCCTCGAGATCCTCGCCGAC
CAGCCGCCCTGCTCGGGCGGGAGCACGGTCGAGAGCCCGGACGGCAGCAGCGTCACCACC
AACTCCTTCAACAGCCTCGCTTCCTGCAACTGCGCCGCGCCTTCCGGTGGCCTCTGTGCC
ATGCAGGCGCCGCCCGCTCTCGAGTTCCCCACGCCGGAGTTCCTGCACCCGCCGCACTTC
TATCAGGATCTGAGCCCTGAGAGCTGCGTGGTGGAAGCAGGCGGCGCGTGGCCGCCGTGC
GACCCCATGGAATTCAACCCTCTTCCTGACGCGCTGCTCTCACAATCCTCGTCCTTCGCG
TCTTCAAATGGCAGCAGTGTTGCATTTCCAGAGGGCTTCGAGCCGTGGCTCAGCACGGCG
GATGCTGTGCCTCATGCTGGCTTGAGCGATTTTGTTCTGCAGAGCCAACAAGCGGCGCAG
TTCAGCCGAGGATTTGAAGAGGCGAGCAGATTTCTGCCTCAAGAGAGCAAGCTTGTGATT
GACCTTGACAGTTTACCGTCAGTTTGGGTGAAACAAGATAACAAGGTTGTGGAGGTCAAG
AGAGAGAAGGCTGATGCTCAAGTGGCAATTCATCGAGGAAAGAAGCATTTCTATGGCGAC
GACTTGGATGCAGATGAAGTGAGATGCTGCAAGCATTCAGCGCCTGTCGTCGACGCAGAT
CACCTTGTGCGGGAGATGATGGACAAGGTCTTGCTATGTGACGGGGAGACATGCTCTAGA
GGTGTCAAGGAGCTGCGTGAGGCCCTGCAG

Homology of Contig U35_23742 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62460.1	821	9e-110	protein\|ZOS1-16 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi2g54670.2	806	2e-134
Arabidopsis v10	None