barSeed - Barley Seed Development Database

Probe CUST_30192_PI390587928

Source Contig U35_23744

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30192_PI390587928	Hv_44K_v2	GGTCAAGAAGGGACTGAAAGATGCAGAACAATGTGGTTCTGAGATGCAGGATGAATTGAA	648	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249937.1	3046	2e-24	1254 - 1313	100	60 / 60	plus	ABC05877
MLOC	MLOC_36702.3	2819	2e-24	1385 - 1444	100	60 / 60	minus	ABC05877
MLOC	MLOC_36702.2	3221	2e-24	1849 - 1908	100	60 / 60	minus	ABC05877 ABC06742
MLOC	MLOC_36702.4	1730	2e-24	342 - 401	100	60 / 60	minus	ABC05877
MLOC	MLOC_36702.1	3315	2e-24	1927 - 1986	100	60 / 60	minus	ABC05877 ABC06742
JLOC1	JLOC1_23673.3	3306	8e-25	1326 - 1385	100	60 / 60	plus
JLOC1	JLOC1_23673.2	3442	8e-25	1227 - 1286	100	60 / 60	plus
JLOC1	JLOC1_23673.1	3222	8e-25	1242 - 1301	100	60 / 60	plus
Harvest21	ABC19245	848	3e-25	649 - 708	100	60 / 60	plus
Harvest35	U35_23744	848	3e-25	649 - 708	100	60 / 60	plus

Contig Sequence (848 bp)

>U35_23744 848 Hv_44K_v2
CAAGGCAGCAGAACACGAGGATTCCAAAACGGCTGGTATTGAGGATGTAGCTGCAAAGGA
AGATGCCAACACAAAGTCAGCAGAACACAAGGACTCCAAAATGGTTATTTTAGAGGATGC
AGATGCAATGGAAGATGAGAAAGCCAAGGCTGCAGAACACGATGATCACAGAACAGGTGG
TGTGGCAGCAGAACACAAGGATCACAGAACAGGTGGTGTGGAGGATGCAGATGCAAATGA
ATACAATGGTGCCAGGGCTGAAGAATGCAAGGATGCCAAAATGAATTCTGTAGATAATGC
AGATATGAAGGAAGATGAAGATGCCAATGCAGCAGAACATGAGGATGCCAAAATGGTTGA
TGTGGATGCTGCAGATTCAAAGGAAGATAATGGCACCAAGGTAGTGGAACACGAGGATGT
CAAAATGGGCACCGTGGAGGATATTGATGCAAAGGAAGATAATAACGCCAAGGCAGCAGA
ACATGAGGATATCATAATGGGTGTGGTAGAGCATGCAGATGTAAAAGAAGATAACAGTTC
CAACATAGCAGGACGTGAGCATGTCAAGATGACAGAGGCTGAGACCAAGCCAGGAGATGC
AGTGCTCGAAGACAAAGGGCACACGGAAGAAAAGGATGTGAACACAGAGGTCAAGAAGGG
ACTGAAAGATGCAGAACAATGTGGTTCTGAGATGCAGGATGAATTGAATGGGAAAGGAAA
CAATGGAGCGGCTCGGCAGCAAGAAAATAAAGCTGAAGAAATGAGTGATGATGATAGTCA
AGGGGAAGAGGAAGTAGAAGAGAAGGGCTCTTCAGTTAAGAAAGAGGAAGGAGAGGATGG
TAAGGCAA

Homology of Contig U35_23744 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None