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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30190_PI390587928Hv_44K_v2TTTGTTGTGTATCATACCTTTGTGTTACTGTATCTTGTAGACGTTTGAAACATTTGGAGC768GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.7641.7971.0530.8840.3740.539
Raw 327.379526.693269.945353.76453.98982.927



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_13284.118798e-251660 - 171910060 / 60plus
Harvest35U35_237468623e-25769 - 82810060 / 60plus



Contig Sequence (862 bp)

>U35_23746 862 Hv_44K_v2
CAGCAGTTTCCCACTCCAGAGATGAAAGATATACGATAAGCAAGAGGCATTCGAGGCGAT
CGAAGGAGAAGCAACACTACAGTGACTCAAGTTCTTCTGAGAGCGACCAGCAGCATCCAA
CACGAAGGCGGGACAAGCAATCCTGCAGTGACTCGAGTTCTTCCGAGAGCGACCGGCATT
CAAGGAGATCAAGGGAAAAGAGACATCACAAGATGCCAGATTTCCCCGTGAGCAGTAGGG
CTTCACGGAAATCGAATGAGAAGTGGCACTATACTGATTCAAGTGCACGTGAAAGCGATA
GACGTTCAAGGAAACCGAGAGAAAAGTCGCGCTACTCTGATCCAAGCGCTTCCGAGTATT
CAGATTCTGATCGGCCTTCACGAAGATCGAACGGGAAGCGGCGCTACACTAATTTGAGTA
CACGTGAAAGCGATAGGCATTCAAGGAAACCGAGGGGAAAATCACGCCACTCTGATCCAA
GTGCTTCTGAGTACTCAGATTCTGATCGGCGCAATAGTCACCGCTGTCGTCGAAGAAAGT
GAGTAAGCGGCGGTTAACATCATATGCTCCTCTCCACAGTCGAAGATATCAGCATTGCTG
TTTCTGTGGTTGCATTAGATAGATATATGTTGTACGGAGTAGTATTTTGTTCCAGCAGTG
TCCGGCTGTGCCATCTCTGGATCACTGTCAGCTGCTCTGCAGAGCGATGATAGTAACGTG
CACCGTGTGGCTTGAGTTGCGTCATCCCGGGGAAGAACTGGTGTGCATTTTGTTGTGTAT
CATACCTTTGTGTTACTGTATCTTGTAGACGTTTGAAACATTTGGAGCTTTTTTTGTGTT
CCTTTAGGGAACGAATTCTTGT



Homology of Contig U35_23746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None