barSeed - Barley Seed Development Database

Probe CUST_30180_PI390587928

Source Contig U35_11770

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30180_PI390587928	Hv_44K_v2	CTAGTACTTCAAGTGACCATTCAGTAACAGATACAGGAATATACTATTCCTCAAATGAAG	797	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64503.2	2149	2e-24	1162 - 1221	100	60 / 60	minus	ABC19922
MLOC	MLOC_64503.3	2150	2e-24	1162 - 1221	100	60 / 60	minus	ABC19922
MLOC	MLOC_64503.1	2376	2e-24	1471 - 1530	100	60 / 60	minus	ABC19922 ABC43886
MLOC	MLOC_64503.4	1923	2e-24	1003 - 1062	100	60 / 60	minus	ABC19922
JLOC1	JLOC1_42363.1	2260	8e-25	855 - 914	100	60 / 60	plus
Harvest21	ABC21693	860	3e-25	798 - 857	100	60 / 60	plus
Harvest35	U35_11770	859	3e-25	798 - 857	100	60 / 60	plus

Contig Sequence (859 bp)

>U35_11770 859 Hv_44K_v2
CGGCACGGGGCCCTGGGTCCTCGGCGGCGGCAGCGGAATGGCGGTGCCGGCCTGGATGCG
GAGGCAGATGGACCAGATCCTGGAGCTGGACATGGAGGAGCTCGAGGTCGAAGAGGTCGA
CGACTCCGGCTCGTCCTCCTCCTCCGACGTCGCCACCTTCCTCAGAAATACTCATGGAGA
TGGAGAGACTAGCACTTCTGGAGAGTTTACATTCAATACGTCTCGGGCTTCCCTGAACAC
ATATGTTGGTGAGGTTGATGATGCCCGGGACAGATTTGCTTTCTTGAATGGTGGTGCAGT
CCTCAGTTTACCTATGTTTTCTCTTCAAGGATTTCTGTTGTTTCCTGAAGCTATCCTGAC
TCTTAGAGTAACTCAACCTAGATTTGCAGCAGCTGTTGATAAGGCTATTAATCATGTTGA
TAATCCATGCATGATAGGTGTGGTTCATCTCTACCAACACGTAAATGATGGACACCATGC
TATTGCTTCAGTTGGCACAACAGCGGAGATACTTGAAGTTAGGCGATTGGATGATGGCTC
ATCAAATGTTATCACTCGAGGTCAGCAACGGTTTCGTCTTAGGCGCAGTTGGGTCGACAT
CGATGAAGTACCTTGGGGTGAGGTCCAAATCATCGAAGAAGACACGCCTTTAAGAACTCC
CAGAGATGCATTTGGACAGTTAGCTGCAATTAACACCTTCAAGCAATGTGATTCCTCGGT
GACCAGTTTTGGTGTATCTTGTTTCAAGCAAAGAGATCCTATGGATTCTGATCTTGATTT
GGATTCTCTGTCATACACTAGTACTTCAAGTGACCATTCAGTAACAGATACAGGAATATA
CTATTCCTCAAATGAAGAT

Homology of Contig U35_11770 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g54040.2	536	3e-96	protein\|ATP-dependent protease La, putative, expressed
Brachypodium v1_2	Bradi2g49550.1	529	3e-111
Arabidopsis v10	AT2G25740.1	547	1e-52	ATP-dependent protease La (LON) domain protein \| chr2:10980175-10983632 FORWARD LENGTH=547