barSeed - Barley Seed Development Database

Probe CUST_3016_PI390587928

Source Contig U35_6283

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3016_PI390587928	Hv_44K_v2	GTGGGTGATGATGAACAACCGAAAAAACAAACTATCAAATGCACATTTGCTAGTGTTAAA	482	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.789	1.425	2.395	2.032	0.604	0.459
Raw	19.166	54.847	78.498	99.767	10.723	8.770

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC45375	533	1e-23	15 - 74	98	59 / 60	minus	ABC45375
Harvest35	U35_6283	556	3e-25	483 - 542	100	60 / 60	plus

Contig Sequence (556 bp)

>U35_6283 556 Hv_44K_v2
GCACGAGGGCGGTACGGGCTGAACCTGCAGCGGGTGTGCTTCCGGACGGCGTACGTGGCG
AGCACGACGGCGCTGGCCGTGGTGTTCCCCTACTTCAACGAGGTGCTGGGCCTGCTGGGC
GCGCTCATCTTCTGGCCGCTCATCATCTACCTCCCCGTCGAGATGTACTGCGTGCAGCGC
CGGGTCCGGGCGTGGACGCCGACGTGGGTCGCGCTGCAGGCATTCAGCGTCGCATGCTTC
GCCGTCGGCACCTTCGCCTTCATCGGCTGCGTCCAGGGCATCGTCCAGAAGAGGCTCGGC
TCCTCCTAGGCCAGACCGCCAGAAACCATTGTTGTACTTGTACATGTCTTCCACCATTAG
CTAACGCTTTAGAAACTGCCAGCTTGTCTATGAAATCTTTAAAAGGTCTTGTATTTAGAA
ACGGAGGGAGTACTTGATTGCATCTTTGGAGTAACTACTGTCTTAATCCCTCTTACGTTA
CAGTGGGTGATGATGAACAACCGAAAAAACAAACTATCAAATGCACATTTGCTAGTGTTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_6283 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56470.2	410	5e-51	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi5g24800.1	476	2e-51
Arabidopsis v10	None