barSeed - Barley Seed Development Database

Probe CUST_30166_PI390587928

Source Contig U35_23752

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30166_PI390587928	Hv_44K_v2	AAAGCAGGTGTTGTTTCTACTACTGGGAGCCAATCAATGTCTAGAAAAATAGCTGAAACT	934	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365524	4501	2e-24	3946 - 4005	100	60 / 60	plus	ABC15872
MLOC	MLOC_74275.2	4500	2e-24	3397 - 3456	100	60 / 60	plus	ABC15872
JLOC1	JLOC1_49496.1	6299	8e-25	2662 - 2721	100	60 / 60	minus
JLOC1	JLOC1_49495.2	6115	8e-25	3395 - 3454	100	60 / 60	plus
JLOC1	JLOC1_49495.1	4537	8e-25	3397 - 3456	100	60 / 60	plus
Harvest21	ABC19351	621	3e-25	562 - 621	100	60 / 60	plus
Harvest35	U35_23752	994	3e-25	935 - 994	100	60 / 60	plus

Contig Sequence (994 bp)

>U35_23752 994 Hv_44K_v2
GGAATTGTACAGGAAGGATGCTTCAAGAGATGACAGGCAATTCTAGAGCATATTTGAGAG
AGGCCATTTCTGAAATCATAATTAATGCTGATAAAAGAGGACAAATAGTAGCGTTGCAGG
AGGCACTTAAAAAACGACAAGACATGAATAGCGAAATACTGCAAAGGTGTCCACGGGTGT
TGTTGGAGATACTTGTTGCTATAAGGACGGGTCTTCCAGATTTTGTAAAGAAAAGCAATA
GCATTGCTACACCTGATTTGGTTGACATTTTTTTGAATTTGAAATGCCGCAATCTCTCAT
GCCAAAGCGTTCTACCAGTGGTTGATTGTGATTGTAAAATTTGTAAGCAGAAGAATGGTT
TCTGTAGTTCTTGCATGTGCATTGTCTGCTTGAAGTTTGACACGGCATCTAATACATGTA
GTTGGGTTGGCTGTGATGTCTGTCTTCATTGGTGCCACACGGATTGTGGCTTACGACGCT
CCTTTATTCGAAAGGGGGAGCTGGTTCTAGGGCACATGGTACTAATGAAATGCAGTTTCA
TTGCGGTGCTTGTGGACATCCATCAGAGATGTATGGTTTTGTGAAAGAAGTCTTCCGAAC
ATGTGCTAAACAATGGAGGGTGGAGGCTCTGATCAGAGAGCTTCAATATGTGGAAAGGAT
CTTCTCTGCAAGTGATGATGTAAGGGGTAGGAGAGTCAGGGACTTTGTCAAGCAGATGTT
GATTAAATTGGAAAACAGGGCTTATTATTCTGAAGTCATCAAATATGTCATTGCATTCTT
TTCTGATGACAATCCTAACATGGGCAGTGGTCCATTAGTGCCACTAAAGGGCATTCCATG
CAGCACTGCTGAAGGAATAAATGGGATTCCTAGTTCGAGTCGAACAGCAACATGGTTACC
ATCAGTTACCTTAGAAGGAGTTCCGTTCCTACAAAAAGCAGGTGTTGTTTCTACTACTGG
GAGCCAATCAATGTCTAGAAAAATAGCTGAAACT

Homology of Contig U35_23752 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11890.1	1441	2e-145	protein\|potyvirus VPg interacting protein, putative, expressed
Brachypodium v1_2	Bradi1g69720.1	1326	6e-153
Arabidopsis v10	AT3G63500.2	1162	6e-69	Protein of unknown function (DUF1423) \| chr3:23446331-23449991 REVERSE LENGTH=1162