barSeed - Barley Seed Development Database

Probe CUST_30152_PI390587928

Source Contig U35_11781

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30152_PI390587928	Hv_44K_v2	CAGGCCGTAAAAGAGAAGGACATCAGGATACAGACACTTGAAAAAATCTTGGAGAAAGAG	980	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.012	1.900	1.230	0.616	0.421	0.342
Raw	1038.086	1389.079	855.169	612.531	159.856	144.053

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54546.4	2368	2e-24	35 - 94	100	60 / 60	minus	None
MLOC	MLOC_54546.5	2365	2e-24	35 - 94	100	60 / 60	minus	None
MLOC	MLOC_54546.1	4128	2e-24	1872 - 1931	100	60 / 60	minus	ABC07755
MLOC	MLOC_54546.2	4125	2e-24	1872 - 1931	100	60 / 60	minus	ABC07755
JLOC1	JLOC1_35112.3	6486	8e-25	4291 - 4350	100	60 / 60	plus
JLOC1	JLOC1_35112.2	6489	8e-25	4294 - 4353	100	60 / 60	plus
JLOC1	JLOC1_35112.1	4759	8e-25	2564 - 2623	100	60 / 60	plus
Harvest21	ABC23414	1051	3e-25	981 - 1040	100	60 / 60	plus
Harvest35	U35_11781	1051	3e-25	981 - 1040	100	60 / 60	plus

Contig Sequence (1051 bp)

>U35_11781 1051 Hv_44K_v2
CGAGGGCCCTTCGGACGCTTAGCGAGCTAAATGATCAGAATAAGATTCTACACAACCGAT
TAGAAGCTCTGCACATTCGATTAGCTGAGCAAGAACGGGGTATTGCTGGGCTTTCATCGC
AACGAGCCGACTCACATGGAGAGGATGATTTGCATGGCGTCGTCAGCTACTTGCGCAGAT
CAAAGGAAATAGCGGAAACAGAAATATCATTGCTTAAGCAGGAGAAATCACGGCTTCAGA
TAGAGCTGGAAAGTGCATTGAAGTCCAGCAAGGAGGCACATGACTTGCTCCGCAGTCAAG
CTGATAGTACAAGATCATCAATGTTCAAGGATGAAGAATTCAAGTCGCTGCAACTCCAGG
TGAGAGAAATTAATTTGCTTCGTGAAAGCAACATACAGCTTAGAGAGGAGAACCGACACA
ATTTTGAAGAATGCCAGAAATTCCGTGAGGAAGTTAACAAAGCTAAAATAGAGATTGAAA
GATTGAACAAAATTCTACTGGAGAAACAGGTATACGCTGAAGTATGTGCAAAAGATCTAG
ACATGAAGAAGACTGAAATAGCAAATCTCAACCAAAGAATTTCTGAGTTAGTTGAAAACA
GTAGAGGTGTCGATTTGAACACATATGAGACCATGAAGGCTGAACTCCAAAATGTCAAAT
CGACCTTGAGAGAGAATTTAGGAGAGCTTGAGCGTGCAAAGAATCTTCTTTCTGAGAGGG
AAGTTGCCATAAGAAATTTAGATGAGAAGCTTGTTGGCTGTCAGTCTGAATTGGGAGCTA
GGGAAAAGAAGCTGAATGACGTTGAGGCTAGCCTGAAATCTGAAATTGATAGACAGAAGA
GGATTACCTTAAACATCAAGAAAAAGGCTGACTCGTTGGTGCGAGAGAAGGCGGATCTTA
CCAAAGAAAATAAAAGCCTTTTGAAGCAGATTGAAGATCTTAAATCAAGTCAGAAAACGC
CGTTGGAAACATCAAATGCTCAGGCCGTAAAAGAGAAGGACATCAGGATACAGACACTTG
AAAAAATCTTGGAGAAAGAGAGAGATGATCA

Homology of Contig U35_11781 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50790.2	678	5e-55	protein\|nuclear-pore anchor, putative, expressed
Brachypodium v1_2	Bradi3g59627.1	2070	7e-174
Arabidopsis v10	AT1G79280.2	2115	1e-76	\| Symbols: NUA \| nuclear pore anchor \| chr1:29819176-29832809 REVERSE LENGTH=2115