- Probe CUST_3014_PI390587928
- Source Contig U35_6285
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3014_PI390587928 | Hv_44K_v2 | TTCATGACATTGCTGAAGCTATTGTTGGCGACATCACTCCATCTGACGGCATACCTAAAG | 524 | GeneList: darkorange2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.090 | 1.087 | 1.189 | 1.098 | 0.610 | 0.587 |
| Raw | 222.260 | 310.756 | 330.530 | 462.662 | 93.274 | 97.559 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63492.2 | 1330 | 2e-24 | 597 - 656 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_63492.1 | 1590 | 2e-24 | 677 - 736 | 100 | 60 / 60 | plus | ABC25203 |
| JLOC1 | JLOC1_41590.2 | 1576 | 8e-25 | 613 - 672 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41590.1 | 2010 | 8e-25 | 613 - 672 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_6285 | 585 | 3e-25 | 525 - 584 | 100 | 60 / 60 | plus |
Contig Sequence (585 bp)
>U35_6285 585 Hv_44K_v2 GGCACAACGCACAAGACGAGAGGGAAAGCAAAGCCGCCGCCGCACGCCGATTCCTCCGCC TTTTCCACTGATCCCCATCGCAAGCTCCAACACAGCGACCGCGGCCGCTTCTCTCCCGAT GGCCGTAAGCTCGCGGCTACCCGCCCCTCCTGCGCGCGGCCTCCTGCGCCGCTCGCCGCC GCGTATCCTCCCTCCGAGGCGCCTCGCTTGTGGTGCCCGCGCTGTCTCCGGGAGCCCTGG GCAAGGCGGATCGCCCGTGCCCAGGCGGCCGCCGCAGCCTCTGGACGCCGCGGCAGTCGC GCCGCCCTCGCCGGTGTCATCCGCGGCGTCGTCCGCCGCCTCGGCCATCGATTTCCTCAC TCTCTGCCATAGCCTCAAGACCACTAAAAGGAAAGGCTGGATAAATCACAGCATCAAGGG TCCCGAGTCTATTGCTGATCACATGTATCGTATGGCACTGATGGCTTTGATCGCTGATGA CCTACCTGCTGTAAATCGAGAAAGGTGTATCAAAATAGCTATCGTTCATGACATTGCTGA AGCTATTGTTGGCGACATCACTCCATCTGACGGCATACCTAAAGC
Homology of Contig U35_6285 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |