barSeed - Barley Seed Development Database

Probe CUST_30140_PI390587928

Source Contig U35_23763

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30140_PI390587928	Hv_44K_v2	AGGAATTTTGGGTGAGAGGCGACTCTGGGTTCATACTGTATGACTTTATGGAGCATGGTA	203	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62341.2	3711	2e-24	1022 - 1081	100	60 / 60	minus	ABC44303
MLOC	MLOC_62341.1	3845	2e-24	928 - 987	100	60 / 60	minus	ABC44303
MLOC	MLOC_62341.3	3593	2e-24	909 - 968	100	60 / 60	minus	ABC44303
MLOC	MLOC_62341.4	3737	2e-24	898 - 957	100	60 / 60	minus	ABC44303
JLOC1	JLOC1_40797.2	3681	8e-25	2661 - 2720	100	60 / 60	plus
JLOC1	JLOC1_40797.1	3928	8e-25	2908 - 2967	100	60 / 60	plus
Harvest21	ABC20541	481	3e-25	204 - 263	100	60 / 60	plus
Harvest35	U35_23763	481	3e-25	204 - 263	100	60 / 60	plus

Contig Sequence (481 bp)

>U35_23763 481 Hv_44K_v2
CATAGAGAAGACAGAAAACTTCGATGACAAGTATGTCATAGGCACAGGTGCTCATGGGAC
AGTGTACAAGGCGACATTGAGTTCAGGGGAGGTCTACGCCATAAAGAAGCTTGCGATTTC
CGCGCGCAGCAGCTCTTACAAAAGCATGATCAGAGAACTGAAGACGCTTGGTAAAGTTCG
GCACAGGAACTTGATAAAGCTGAAGGAATTTTGGGTGAGAGGCGACTCTGGGTTCATACT
GTATGACTTTATGGAGCATGGTAGCCTGTATGATGTCCTGCACGGGATCGGGACGCCGAG
CCTGGACTGGAGCATGCGCTACAACATAGCCCTTGGAACTGCCCATGGCCTGGCATATCT
TCACCATGACTCTGTCCCCGCGATCATCCATCGAGATATCAAGCCGAGCAACATATTGCT
GAACAAGGACATGGTGCCGCGCATCTCGGATTTTGGCATAGCGAAGATCATGGACCAGTG
C

Homology of Contig U35_23763 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34640.1	1113	8e-82	protein\|receptor-like protein kinase precursor, putative, expressed
Brachypodium v1_2	Bradi3g34470.1	1118	6e-91
Arabidopsis v10	AT1G73080.1	1123	2e-60	\| Symbols: PEPR1, ATPEPR1 \| PEP1 receptor 1 \| chr1:27484513-27488021 FORWARD LENGTH=1123