barSeed - Barley Seed Development Database

Probe CUST_30136_PI390587928

Source Contig U35_23767

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30136_PI390587928	Hv_44K_v2	GGCCGAGCTCAAGAAGATGCAGCGCGTCAAGGTGTTCGAGCCCACCATGAACTTTCCTCT	536	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.292	2.457	1.581	0.598	0.227	0.250
Raw	1071.162	1761.761	1000.496	561.139	76.800	93.295

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57360.3	1892	2e-24	1298 - 1357	100	60 / 60	minus	None
MLOC	MLOC_57360.2	1640	2e-24	1243 - 1302	100	60 / 60	minus	None
MLOC	MLOC_57360.1	2001	2e-24	1247 - 1306	100	60 / 60	minus	None
JLOC1	JLOC1_37162.1	1995	8e-25	570 - 629	100	60 / 60	plus
Harvest21	ABC47824	574	3e-25	515 - 574	100	60 / 60	plus
Harvest35	U35_23767	596	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_23767 596 Hv_44K_v2
ATCCCCATCACCCCACGCATCCACATCTCTCTCCTCGGACCGATCCCATGGCGACCGTGG
CGGCGACCGAGAGCAGGAGGAGCGGCCGGAGCCGCAAGGCCCTCGCGCCGGTGCCCGACA
ACGACGCCAACATCTCCGCCGGAGGGGCCGACCTCGCTGCTGCCCTCCCCCCGCAGCCGC
ACAAGGCCAAGAGAACGTCGCCCAAGATGCGCAAGGCGGAGGTGTCCCCGATAGCCGACG
AGAGGAAGGGAACGCCTCCCGCCCTGGTCGACCCGGCCGCCGTCTCCCTTGGGAAGGCAG
ATGTCGCCACGGCACCCGCCTCAACACGGAAGGTGAAGAGGGCGTCGTCCAAGGGCGGCA
AGGCCAAGGACGCGGCGCCGTCGATGTCCGACGAGCTGACGGAGCTGCAGGGGATGCTGG
AGAGGCTGCGGCTGGAGAAGGAGAAGGCGGAGGAGATGGTGCGGGAGCGCGACGAAGGTC
ATCCGGAAGAAGGAGGAGGAGCTCGAGACCAAGGGCAAGCAGCAGGAGCGCCTCCAGGCC
GAGCTCAAGAAGATGCAGCGCGTCAAGGTGTTCGAGCCCACCATGAACTTTCCTCT

Homology of Contig U35_23767 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None