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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30135_PI390587928Hv_44K_v2CTCCACAGAGGCCCACCACCTTCAAATTAGGTACAGTGAAGAATCATATGACGAAACAAG635GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9911.4311.2901.0620.6240.615
Raw 260.240576.153457.888588.344120.124131.735



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_23676.236812e-243335 - 339410060 / 60plus None
MLOCMLOC_23676.116682e-24368 - 42710060 / 60minus None
MLOCMLOC_23676.331272e-24286 - 34510060 / 60minus None
JLOC1JLOC1_16340.233648e-252790 - 284910060 / 60plus
JLOC1JLOC1_16340.118418e-251267 - 132610060 / 60plus
Harvest21ABC191806993e-25636 - 69510060 / 60plus
Harvest35U35_237686993e-25636 - 69510060 / 60plus



Contig Sequence (699 bp)

>U35_23768 699 Hv_44K_v2
GTGGCAGCGGCCACTGGAACAATAATGCCCGACATGGTAGTGGTAACAACAACGGCTTTG
GTGGTCGTGGCGGTCGGAATCGTCGTGACCACGAAAGAGGGAGTAATTTCTCGCCAAGGA
ACTATTCCCGAGCATTGCCAATGCCGCAGCAGCAGGGCTATTACCAGCCTGGACCATTTC
AACGGCCGCCGCCGCAATCACCTGCTGCTGCCCATTTTATGATGCCACCTTTCGTGTCAT
ATGTGCAACCCATTGCGTACCCCTCTGATTTACAGGTCTCCTATCCTTACTATGTCACAC
AAGTTGAGCAGCAGTTTCAGAACATGCATCTTATCCGACCGCCAATGCAGCCTTTGGCGC
TTCAGCAAGATCAAATAAAACTCCAAAATGATATCCAGCTGCAGATTGAGCACTATTTTA
GCACTAATAATCTTTGCCACGACACATACTTGAGAGAACGTATGGATGATCAAGGATGGG
TACCTATTGACTTAATCGCTGGATTCCCTATGTTGACCAGGTTCACAATGTTGGGAATAG
ACACCAACTATATACTAGATTCTATCCGCGGCTCTGAGTTGTTAGAAGTGCAGGGAAATA
ATGTCCGAAGACGCAATAATTGGGAAGCATGGTTACTCCACAGAGGCCCACCACCTTCAA
ATTAGGTACAGTGAAGAATCATATGACGAAACAAGGCTG



Homology of Contig U35_23768 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os09g36920.15065e-62protein|la domain containing protein, putative, expressed
Brachypodium v1_2Bradi4g36594.35075e-82
Arabidopsis v10None