barSeed - Barley Seed Development Database

Probe CUST_3012_PI390587928

Source Contig U35_6287

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3012_PI390587928	Hv_44K_v2	TCGCTGAATGTAAGATGGAGATAAATAAAGAAGCAAGTGACACTCCTCTCTTGTGCATTT	605	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.803	5.246	1.339	0.743	0.365	0.377
Raw	179.904	147.695	35.334	32.323	3.386	5.211

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372459	2681	2e-24	1995 - 2054	100	60 / 60	minus	ABC12954
MLOC	MLOC_52520.1	1295	2e-24	200 - 259	100	60 / 60	minus	ABC12954
MLOC	MLOC_52520.2	769	2e-24	143 - 202	100	60 / 60	minus	ABC12954
JLOC1	JLOC1_33662.1	1007	8e-25	247 - 306	100	60 / 60	minus
Harvest35	U35_6287	676	3e-25	606 - 665	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_6287 676 Hv_44K_v2
CCTGTGAAGAAGAGTTCATTATAAATATAGTAATAGTGGACAGCAACTATTCTTTTTTTG
ACAGCAACTACTGATGAATGGAGATAAACAATAATATATGCACCCGGAATCCAGACAAAG
CAAGTTTTCCAGAGATGCTTGGCTTTATATATGCAAGCAACTGCGGGCGAGGCAACACAA
AGCAAAGCAAACCAGTCCAGTGAAGAAAAAGCCATAGATAGTTCAGAAGCCAAGCAGAGA
TCAACCAACAATGCTGATACTTCTTGAATTGGGGATCTGGATCCTCCCGGTGGCGTGCAT
CTTCACACCATGCAGGCGCCTAGTTCTTCTACTTGCCAACCTCCAGCAGCTGAAGGCGAG
CATCATGCGCACAAGATCATCATCTCCAGCCCTTTGGAGTCGCCTGGAGAGGCTGCAGAC
GATAACCGTCACATTGTGAAGGAAACTTGGAACTAGATCCGCAGCTGGAGACGTCCGAAC
ACCAATTTCATCAGGTGGGCAGCCCCTTGCTAGCATTTCCTTGCCTCTGGGGTGGGATGA
ACAACTCCCCTTGTCCATAGATACTCTGTTTTTTAGCTTTCTCTTGAAACCAAATGTATT
GTCCCTCGCTGAATGTAAGATGGAGATAAATAAAGAAGCAAGTGACACTCCTCTCTTGTG
CATTTAAAAAAAAAAA

Homology of Contig U35_6287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None