barSeed - Barley Seed Development Database

Probe CUST_30123_PI390587928

Source Contig U35_11795

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30123_PI390587928	Hv_44K_v2	GCAATGCGAGGCATCATTGGAGACTCATCCAACTGTCGACAATACAATCAAAGATATTTC	983	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.710	1.104	1.709	1.406	0.749	0.741
Raw	60.594	134.656	196.633	250.124	46.890	51.987

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61771.2	6038	2e-24	303 - 362	100	60 / 60	minus	None
MLOC	MLOC_61771.1	6317	2e-24	545 - 604	100	60 / 60	minus	None
JLOC1	JLOC1_40381.1	6036	8e-25	5595 - 5654	100	60 / 60	plus
Harvest21	ABC22842	1042	1e-24	984 - 1042	100	59 / 59	plus
Harvest35	U35_11795	1043	3e-25	984 - 1043	100	60 / 60	plus

Contig Sequence (1043 bp)

>U35_11795 1043 Hv_44K_v2
GATCTTGAAGAGCATGTTGATGGTTTGAGATCAGCGAAAGATGAAGTTGAAATTCTAAAC
GTGGTTCTGAAATCGAAATTGGAGGAACAGCATACTGAGATGTCATCACTGCTACATGAT
TCTGGATATCAGTTGACAAGTTTAAAAGAACAGAACAAAGAGCTTACACAAAAACTTGCT
GAACAAACTCTGAAGGCAGAAGAGTTCAAGAATCTGTCTATCCAGTTGAGAGAGCTAAAA
GAAAAGGCTGAAGCTGGGAAAAAGGAGAAAGAGGGGTCGTTGTTCGCCATACAAGATTCC
CTTAGAATTGCATTTATCAAAGAGCAATATGAATCAAAGGTTCAAGAGCTTAAAAGTCAG
GTGTTTGTCTCTAAAAAGTATTCTGAAGAGATGTTACTGAAGTTACAAAGTGCTTTGGAT
GAGGTTGAAACTGGGAGGAAAAACGAAATTGCTCTGGCTAAAAGAATTGAAGAGCTATCA
ATGAAAGTTTCTGAACTGGAGGTGGAGATGCAGGATTTATCTGCTGATAAAAGAGAGTTG
TCTAATGCATATGACAGCATAATTACGGACCTGGAATGCACAAAATTGAACTTCGATTGC
TGTAAAGAAGAAAAGCAGAGGATTGAGGCCTCTCTTCAGGATTGCAGCGAGGAACGCAAT
AAAATAAGGGTGGAGCTTGACCTAGTGAAAAAGTTGCTGGAAAATATGGCATTAACCGAC
CATATCCCATCATCTGATGGTTATGGATCATGCATCCCTCGTGCCACATCTATCGGGCAA
ATTCTGGGAGATGTTAAATCTGAGTCTACACCGGAGTTAATACCAAATATAACAGAAGTT
GATTCAGAATTAAAGGAAGATGAAGGTAGAATCCCTAGCACACATATTTCATCAAATGTA
GCACAATCAGAGGATGCTGGCAAGTCTGATGAGCATCCACATGCCAAGCACGCACCGACA
AAGAACCTGGAGAATTGCCATAAGCAATGCGAGGCATCATTGGAGACTCATCCAACTGTC
GACAATACAATCAAAGATATTTC

Homology of Contig U35_11795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g21940.1	1961	2e-139	protein\|expressed protein
Brachypodium v1_2	Bradi3g03290.1	1903	2e-167
Arabidopsis v10	None